G1304426 (LOC100380855)


Basic Information

Item Value
gene id G1304426
gene name LOC100380855
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51303995 ~ 51315870 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1488099
CTCTTGTGAGGAGACTCCCCTGTAGCCGAAGTCGTGCAGCTTGTACTCCAGCTTGTCCAGGTTGCCAGAGGTCTCCAGCAGGTACTTGGCTAGAATCTTCTTCTGCTCCCTGGAGTTGGTTGCTACGGTGACGGGGTACCAGACCTGAACAAGGATGgtCTCCACCCAGTTGGTGAGCCAGTAGCATTCTGGGTCGGTGCTCTCCACGGTGAAGAGGACGTTACCCCGTGGGATCACACTTCCCTCCGGCACCGCCTTGATCTCTATGGGTAGGTGGCCGTCATACTtCTCCAGTATGTAGTTCCAGCCCTTCTCGTTGAAGACATCATCCTGGAAGTGTTCCCTGTACACCTCCTTCGCTTCCTGGATCTTCTCTGGAGTCACCACCTTccCTTTTAAGTATTTGTTGGTGATGTACTGCAGGCCATAGAAGACCGTCGTCTCATACTTGACTTTTCTGTTCTTGGTCGGGTCAGGCCTCTTCTCGCGGCACTCGAAGTAGGAGTACACTTTACTGGTGTTTGGAGGGTACTGCTTGTAGTGTGTCACCTTATAAGAATCAGTAGCTAACAATATGTTGAAATTAGGGTCTCTGTGCTCCATCTTCCCCTTGGTTTCAGTCAGTCGCGGGTGTCAGTATTCTTGCTCCGTGTTGGGGGACTCACAACCTAGCTCTGTCGCTGGGGAAGGGACGCTGAAGAGACCGGGGGAGGCGGGACTCGCGTCACACAAGCGGAGGGGTAGACGATAACGTAGTGTAGGGGGGCAAGAACACAATGCAGGCTTATCATTTGCC

Function

NR:

description
nicotinamide phosphoribosyltransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1488099 True 796 lncRNA 0.53 5 51303995 51315870

Neighbor

gene id symbol gene type direction distance location
LOC110490266 LOC106609208 coding downstream 2498 51289611 ~ 51301497 (-)
LOC110490268 LOC106576083 coding downstream 16849 51280478 ~ 51287146 (-)
LOC110490265 LOC106576097 coding downstream 23815 51274831 ~ 51280180 (-)
LOC110490264 LOC106576080 coding downstream 98068 51199223 ~ 51205927 (-)
LOC110490262 LOC106576078 coding downstream 138799 51152066 ~ 51165196 (-)
LOC110490744 LOC106576129 coding upstream 469618 51785488 ~ 51793354 (-)
LOC118936382 NA coding upstream 501238 51817108 ~ 51819851 (-)
LOC110490745 LOC106576126 coding upstream 812117 52127987 ~ 52131038 (-)
LOC110490277 LOC106576111 coding upstream 863549 52179419 ~ 52183904 (-)
LOC110490278 LOC106576113 coding upstream 877192 52193062 ~ 52203096 (-)
G1304413 NA non-coding downstream 29565 51273438 ~ 51274430 (-)
G1304355 NA non-coding downstream 128984 51174772 ~ 51175011 (-)
G1304352 NA non-coding downstream 134073 51169334 ~ 51169922 (-)
G1304342 NA non-coding downstream 152279 51151516 ~ 51151716 (-)
G1304302 NA non-coding downstream 247537 51051493 ~ 51056458 (-)
G1304464 NA non-coding upstream 63590 51379460 ~ 51382461 (-)
G1304539 NA non-coding upstream 202387 51518257 ~ 51519053 (-)
G1304570 NA non-coding upstream 255507 51571377 ~ 51572035 (-)
G1304581 NA non-coding upstream 267968 51583838 ~ 51645484 (-)
G1304577 NA non-coding upstream 268083 51583953 ~ 51651154 (-)
LOC110490244 LOC106609225 other downstream 1002988 50290050 ~ 50301082 (-)
G1302602 NA other downstream 1639699 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 2464844 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 3599957 47584674 ~ 47707520 (-)
G1304896 LOC107662719 other upstream 605625 51921495 ~ 51922528 (-)
G1304988 NA other upstream 673841 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 1491113 52630838 ~ 52809711 (-)
G1306232 LOC106576137 other upstream 1738979 53054849 ~ 53062280 (-)

Expression


Co-expression Network