G1304570


Basic Information

Item Value
gene id G1304570
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51571377 ~ 51572035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1488260
cacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctagttcgcgcccgggtatgggcgaggggacggtctaaaattatactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaaggggggtgagtgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgt
>TU1488261
cacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctagttcgcgcccgggtatgggcgaggggacggtctaaaattatactgttacattgatgctgttgacccggattactggttgctgcggaaaaaaggaggaaggtcaaaaggggggtgagtgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgt
>TU1488262
cacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctagttcgcgcccgggtatgggcgaggggacggtctaaatttgtactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaaggggggtgagtgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1488260 False 360 lncRNA 0.53 2 51571377 51572035
TU1488261 False 361 lncRNA 0.52 2 51571377 51572035
TU1488262 True 360 lncRNA 0.53 2 51571377 51572035

Neighbor

gene id symbol gene type direction distance location
LOC110490266 LOC106609208 coding downstream 269880 51289611 ~ 51301497 (-)
LOC110490268 LOC106576083 coding downstream 284231 51280478 ~ 51287146 (-)
LOC110490265 LOC106576097 coding downstream 291197 51274831 ~ 51280180 (-)
LOC110490264 LOC106576080 coding downstream 365450 51199223 ~ 51205927 (-)
LOC110490262 LOC106576078 coding downstream 406181 51152066 ~ 51165196 (-)
LOC110490744 LOC106576129 coding upstream 213453 51785488 ~ 51793354 (-)
LOC118936382 NA coding upstream 245073 51817108 ~ 51819851 (-)
LOC110490745 LOC106576126 coding upstream 555952 52127987 ~ 52131038 (-)
LOC110490277 LOC106576111 coding upstream 607384 52179419 ~ 52183904 (-)
LOC110490278 LOC106576113 coding upstream 621027 52193062 ~ 52203096 (-)
G1304539 NA non-coding downstream 52324 51518257 ~ 51519053 (-)
G1304464 NA non-coding downstream 188916 51379460 ~ 51382461 (-)
G1304426 LOC100380855 non-coding downstream 255507 51303995 ~ 51315870 (-)
G1304430 NA non-coding downstream 258935 51312011 ~ 51312442 (-)
G1304413 NA non-coding downstream 296947 51273438 ~ 51274430 (-)
G1304581 NA non-coding upstream 11803 51583838 ~ 51645484 (-)
G1304577 NA non-coding upstream 11918 51583953 ~ 51651154 (-)
G1304586 NA non-coding upstream 14458 51586493 ~ 51589206 (-)
G1304584 NA non-coding upstream 56197 51628232 ~ 51629472 (-)
G1304580 NA non-coding upstream 57675 51629710 ~ 51650477 (-)
LOC110490244 LOC106609225 other downstream 1270370 50290050 ~ 50301082 (-)
G1302602 NA other downstream 1907081 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 2732226 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 3867339 47584674 ~ 47707520 (-)
G1304896 LOC107662719 other upstream 349460 51921495 ~ 51922528 (-)
G1304988 NA other upstream 417676 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 1234948 52630838 ~ 52809711 (-)
G1306232 LOC106576137 other upstream 1482814 53054849 ~ 53062280 (-)

Expression


Co-expression Network