G1304577


Basic Information

Item Value
gene id G1304577
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51583953 ~ 51651154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1488279
agtataataccctgagaggagagagaggggaggcagtagtataataccctgagaggagagagtcaggatgGAGTAGTTTTTtatccagagaggagagagagaggagggagtagtatgataccctgaaaagagagagtggggatggagtagtataatacactgagagtagaaagagaggagggaatcGTATagtaccctgagaggagagagtggggatggagaagtataataccctgagagtagagagaggggagggagtattataataccctgagaggagagagagagaggagggagcagtataataccctgagagaagagggagtagtATAacaccctgagaggagagagcgaggagggagtAGAATAATACCctgaaaagagagagtggggatggaGAAGTATAATAcgctgagagtagagagagagagaaggagggagtagtataataccctgagaggagggagtagtataataccctgaaaagagagagtggggatggaGAAGTATAATACGCTGAGAgtagagaaaggggagggagtagtataataccctgagagtagagcgagaggagggaatagtataataccctgagaggagagagcgaggagggagtAGAATAATACCctgaaaagagagagtggggatggaGAAGTATAATAcgctgagagtagagagagagagaaaaggagggagtagtataataccctgagaggagagagtagtattataccctgagagaggagagagtagtataatacgctgagagtagagagagaggagggggaagtacAATacgctgagaggagggagaggggagggagaagtataataccctgagaggagagagaggggagggagttgtataataacctcagaggagagagaggcgagggagtagtataataccctgaaaggagagagaggggagggagtagtataataccctaagagtagagagaggagggagtagtataataccctgagagtagagagaggcgagggagtagtataataccctgagaggagagatagaggagggagaagtATAATACCccgagagagaggatggagtagaataataccctgagaggagagagagaggagagagtagtacAATAtcctgagaggagagatagaggagggagtagtataataccctgagagaagagagagaggagggagtagtataataccctgagaggagggagtagtattataccctgagaggggggagaaaggagggagtagtataataccatgagagtagaaagagaggagggggaagtacAATacgctgagaggagggagaggggagggagtagtatactaccctgagaggagagagagaggagggagtagtataataccctgagaggagagagaggcgagggagtagtataataccctgagaggagagatagaggagggggaaGTACAATacgctgagaggagggagaggggagggagaagtataataccctgagaggagagagaggggagggagttgtataataccctcagaggagagagaggtgagggagtagtataataccctgaaaggagagagaggggagggagtagtataataccctaagagtagagagaggagggagtagtataataccctgagaggagagagagaggagggagtagtataataccctgagaggagagagaggggagggagtagtataataccctgagagtagagagagaggagggagtagtataatactctgagaagagagagagaggaggga
>TU1488281
accctgagaggagagagaggggagggagtagtataataccctgagaagagagagagaggggggagtagtataataccctgatagtagagagagGGGATGGAGTAGTATAAttcaatgagaggagagagagaggagggagtagtataataccgagagaggagggagtagtataataccctgagaggagagagaggggagggagtagtataataccctgagaggagagagaggggggagtagtataataccctgagaggagagagtcgGGATGGAGTAGTTTTTtacccagagaggagagaaagaggagggagttgtataataccctgagaggagagagagaggagggagtagtataataccctgagagagaggagggagtagtataataccctgagaggagagagagagtagggagtattataaaaccctgagaggagagagaggagggagtagtataataccctgagggGAGAGAGTCGGGATGGAGTAGTTTTttacccagagaggagagagagaggagggagttgtataataccgagagaagagggagtagtataataccctgagagtagagagaggagagggagtattataataccctgagaggagagagagagaggagggagcagtataataccctgagagaagagggagaggagggagtagtataataccctgagagtagAGAGTGGGGATGGAGTAGTATAAttcaatgagaggagagagagaggagggagtagtataataccgagagaggagggagtagtataataccctgagagtagagagaggagagggagtattataataccctgagaggagagagagagaggagggagcagtataataccctgagagaagagggagaggagggagtagtataataccctgagaggagagagagaggagggagtagtataataccgagagaggagggagtagtataataccctgagaggagagagagaggagggagtagtataataccgagaaaggagggaggagtataataccctgagaggagagagagaggggggagtagtataatactgagagaggagggagtagtataataccccgaagagagagagtggggatggagaagtataatactgagagaggagggagtagtataataccc
>TU1488271
gagtagtattataccctgagaggagagaaagaaggaagggagtagtataataccctgagagtagAGAGCGAGGAGGGAGTAGAATAATACCctgaaaagagagagtggggatggaGAAGTATAATAcgctgagagtagagagagagaaggagggagtagtataataccctgaAGAGAGAGATTGGGGATGGAGAAGTATAAttcaatgagaggagagagagaggatggagaagtataataccctgataggagagagaggggaggcagtagtataataccctgagaggagagagtcaggatgGAGTAGTTTTTtatccagagaggagagagagaggagggagtagtatgataccctgaaaagagagagtggggatggaGAAGTATAATACActgagagtagaaagagaggagggaatcGTATagtaccctgagaggagagagtggggatggAGAAGTATAATACActgagagtagaaagagaggagggaatcGTATAGtaccctgagaggagagtgggaatggagaagtataataccctgagagtagagagaggggagggagtattATAATACcctgataggagagagagagagaggagggagcagtataataccctgagagaagagagaggagggagtagtataataccctgagaggagagagagaggagggagtagtataataccctgagaggagagagagagtagggagtagtataataccctgatagaagagagagaggagggagtagtataatacccggagagaagagagaggagggagtagtataataccctgagagaagagagaggagggagtagtataatacactgagaggagagagagaggagggagtagtataataccctgagaggatagagagagaagagagagaggagggagtagtataataccttgagagtagagagaggggagagagtagtttaataccctgagaggagggagtagtattataccctgagagaagagagagaggcgagggagtagtataataccctgaaaggagagatagaggagggagtagtataataccctgagagaagagagagaggagggagtagtataataccctgagaggagggaggagtataataccctgagagtagaga
>TU1488278
agagagaggagggagtagtataataccctgagaggagagagaggcgatggagtagtataataccctgagaggagagatagagtaGGGAGAAGTATAATaccatgagaggagagagaggggagggagttgtataatacccttagaggagggagaggcgagggagtagtataatactctgagaggagaaagagaggagggagtagtataataccctgagaggagagatagaggagggagtagtataataccctgagagaagagagagaggagggagtagtataataccctgagaggagggagtagtattataccctgagaggggggagaaaggagggagtagtataataccatgagagtagaaagagaggagggggaagtacAATacgctgagaggagggagaggggagggagtagtataataccctgagaggagagagaggggagggagttgtataataccctcagaggagagagaggcgagggagtagtataataccctgagaggagacagagaggagggagtcgtataataccctgagaggagagagagaggagggagtagtataatacactgagaggagagagaggggagggagtagtataatacgctgagaggagagagagaggagggagtagtataatacgctgagaggagagatagaggagggagtagtataataccctgagagaagagagagaggagggagtagtataataccctgagaggagggaggagtataataccctgagagtagaga
>TU1488284
agaggagagagaggggagggagtagtataagaccctgagaggagagagtggggatggagaagtataataccctgagaggagagagaggggagggagtattataataccctgagaggagagagagagaggagggagcagtataataccctgagagaagagagaggagggagtagtataataccttgagaggagagagagaggagggagtagtataataccctgagaggagagagagaggagggagtagtataataccctgagaggagagagagagtagggagtattataaaaccctgagaggagagagagagtagggagtattataataccctgagaggagagagagaaggaagggagtagtataataccctgagagtagAGAGCGAGGAGGGAGTAGAATAATACCctgaaaagagagagtggggatggaGAAGTATAATAcgctgagagtagagagagagaaggagggagtagtataataccctgagagacgagggagtagtataataccctgagaggagagagagaggagtgagtagtataataccctgagagaagagagagaggagggagtagtataataccctgagagaagagagaggagggagtagtataatacactgagaggagagagagaggagggagtagtataataccctgagaggatagagaggcgagggagttgtataatacccttagaggagagagaggcgagggagtagtataataccctgagaggagagatagaggagggagtagtataataccctgagaggagaatgagaggagggagaagtaTAATACcccgagagaggagggagtagtttaataccctgagaggagagagagaggagggagtagtataataccctgagagtagagagaggggagagagtagtataataccctgagaggagagatagag
>TU1488277
aggcaatagtataataccctgagaggagagagtcaggatgGAGTAGTTTTTtatccagagaggagagagagaggagggagtagtataagaccctgagaggagagagcgaggagggagtagtatgataccctgaaaagagagagtggggatggaGAAGTATAATAcgctgagagcagagagagagagaaggagggagtagtataataccctgagagtagagagagagagaaggagggagtagtataataccctgagagtagagagtggggatggagtagtataatacgctgagagaagagagaggagggagtagtataatacactgagaggagagagagaggagggagtagtataataccccgagaggagagatagaggagggagtagtataataccctgagagaagagagagaggaaggagtagtataataccctgagaggagggagtagtattataccctgagaggggggagaaaggagggagtagtataataccatgagagtagaaagagaggagggggaagtacAATacgctgagaggagggagaggggagggagtagtatactaccctgagaggagagagaggggaggtagttGTATAATAccctaagaggagagagaggcgagggagtagtataataccctgagaggagacagagaggagggagttgtataataccctgagaggagagagagaggagggagtagtataataccttgagagtagagagaggggagagagtagtataatacgctgagaggagagagagaggagggagtagtataatacgctgagaggagagatagaggagggggaagtacAATacgctgagaggagggagaggggagggagaagtataataccctgagaggagagagaggggagggagttgtataataacctcagaggagagagaggcgagggagtagtataataccctgaaaggagagagaggggagggagtagtataataccctaagagtagagagaggagggagtagtataataccctgagagtagagagaggcgagggagtagtataataccctgagaggagagatagaggagggagaagtATAATACCccgagagagaggatggagtagaataataccctgagaggagagagagaggagagagtagtacAATAtcctgagaggagagatagaggagggagtagtataataccctgagagaagagagagaggagggagtagtataataccctgagaggagggagtagtattataccctgagaggggggagaaaggagggagtagtataataccatgagagtagaaagagaggagggggaagtacAATacgctgagaggagggagaggggagggagtagtatactaccctgagaggagagagagaggagggagtagtataataccctgagaggagagagaggcgagggagtagtataataccctgagaggagagatagaggagggggaaGTACAATacgctgagaggagggagaggggagggagaagtataataccctgagaggagagagaggggagggagttgtataataccctcagaggagagagaggtgagggagtagtataataccctgaaaggagagagaggggagggagtagtataataccctaagagtagagagaggagggagtagtataataccctgagaggagagagaggcgagggagtagtataataccctgagaggagagatagaggagggagaagtataatacccgagagagaggagggagtagaataataccctgagaggagagagagaggagagagtagtacAATAtcctgagaggagagatagaggagggagtagaataataccctgagaggagagagaggcgagggagttgtataatacccttagaggagagagaggcgagggagtagtataataacctgagaggagagatagacggagaggggggagtagtataataccctgagaggagggagaagtaTTATACcctgagaggggggagaaagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1488279 False 1763 lncRNA 0.48 6 51583953 51649162
TU1488281 False 1141 lncRNA 0.47 8 51585612 51651154
TU1488271 False 1130 lncRNA 0.46 8 51586277 51648722
TU1488278 False 758 lncRNA 0.48 3 51586277 51590455
TU1488284 False 925 lncRNA 0.47 4 51593193 51649918
TU1488277 True 1997 lncRNA 0.48 3 51593882 51646134

Neighbor

gene id symbol gene type direction distance location
LOC110490266 LOC106609208 coding downstream 282456 51289611 ~ 51301497 (-)
LOC110490268 LOC106576083 coding downstream 296807 51280478 ~ 51287146 (-)
LOC110490265 LOC106576097 coding downstream 303773 51274831 ~ 51280180 (-)
LOC110490264 LOC106576080 coding downstream 378026 51199223 ~ 51205927 (-)
LOC110490262 LOC106576078 coding downstream 418757 51152066 ~ 51165196 (-)
LOC110490744 LOC106576129 coding upstream 134334 51785488 ~ 51793354 (-)
LOC118936382 NA coding upstream 165954 51817108 ~ 51819851 (-)
LOC110490745 LOC106576126 coding upstream 476833 52127987 ~ 52131038 (-)
LOC110490277 LOC106576111 coding upstream 528265 52179419 ~ 52183904 (-)
LOC110490278 LOC106576113 coding upstream 541908 52193062 ~ 52203096 (-)
G1304570 NA non-coding downstream 11918 51571377 ~ 51572035 (-)
G1304539 NA non-coding downstream 64900 51518257 ~ 51519053 (-)
G1304464 NA non-coding downstream 201492 51379460 ~ 51382461 (-)
G1304426 LOC100380855 non-coding downstream 268083 51303995 ~ 51315870 (-)
G1304624 NA non-coding upstream 62632 51713786 ~ 51714131 (-)
G1304636 NA non-coding upstream 80469 51731623 ~ 51731898 (-)
G1304884 NA non-coding upstream 261378 51912532 ~ 51912858 (-)
G1304887 NA non-coding upstream 262539 51913693 ~ 51915280 (-)
LOC110490244 LOC106609225 other downstream 1282946 50290050 ~ 50301082 (-)
G1302602 NA other downstream 1919657 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 2744802 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 3879915 47584674 ~ 47707520 (-)
G1304896 LOC107662719 other upstream 270341 51921495 ~ 51922528 (-)
G1304988 NA other upstream 338557 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 1155829 52630838 ~ 52809711 (-)
G1306232 LOC106576137 other upstream 1403695 53054849 ~ 53062280 (-)

Expression


Co-expression Network