G1305356


Basic Information

Item Value
gene id G1305356
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52174990 ~ 52176142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1489146
CGAGTGTACAATTTAATAGTCCATTATTCTTCCAACCTCATTTCTGAAGGTTTGAGGTCCATATATCCTGGTTACTGAACAGTTTCACTAACCGTGAAAACAGACAGAGCGATACTGTAAAAAACAGCATTAGTTCCCTTCCCCAATGAGAAAGCAGTATCCCTCTGTGTAGAGACTAGGTTAGTTTCAATGGTAGATGAGTGTTAGTGTAGTTCACTGGTCCTGAAGGACAGTTTTGTTAGTGAAACAGTTCAGATGTCATATTAAGTTAACACTAATTCCTCCTCAAGCGTTGCATCCGCACCGACCTGATTCAAACAAAGAACTGCAGGCGGCTGATTGCTACAGTAAAACATATGTTTGTAGagtatactgtaactgtatatTGTAACTGATGAAACAAGCCGAAACGCAGagcagacagctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctactGTAGTGTACGGGTTGACAGTATTGGATAATTGAAGTGATATCGGTAGCCTTTAAAGCATAACTTTGCAGATACAGCCATGATACTGCTCCGTATTCACGTACTGAGCCGCTTCTTTCAATTCGTGCAAAAATACAAACTCTGAGTAGATTTACCATTGACAGCGAATGGGACTAAATATTCCAACAGAGCTGATTTCGTAAGAAAATAAGAGCTAAACTAGGATTTTTGAATAAGTAAAAATTAAGTAAGAGAAGGGTATGAAAATAGTGTTCTCGTTCTTAACAACTCTTAACATTTAGGGCCCTGTCAGTTTGTTCATTTGTTCTCCCTCCAGTCACTGACTGAACTCTACAGATCAAGAGAAACTtgacataaaaaaaatgttaatgCAGGAGAGAACAACTTTACAGAAAGAGAACatgacaaacctttacagattaAATGAGGTATTGCAcagaatacaaataaaaaaaaaagcataaaGGCAACAAAAATATACAGCAAATCgataaaacatttacattatcATTTGAATAAGATTTAGAAAAACAATTTAGGAACAATGTAGTGTTGTCATAATCATCTGGGGGGGGGGTGTCACTAGTCATCCCACTCATCATCATCCTCAAAgtcctcttcctcatcatcatcgt
>TU1489143
GTAAATATTAACATTTATTCGAGTGTACAATTTAATAGTCCATTATTCTTCCAACCTCATTTCTGAAGGTTTGAGGTCCATATATCCTGGTTACTGAACAGTTTCACTAACCGTGAAAACAGACAGAGCGATACTGTAAAAAACAGCATTAGTTCCCTTCCCCAATGAGAAAGCAGTATCCCTCTGTGTAGAGACTAGGTTAGTTTCAATGGTAGATGAGTGTTAGTGTAGTTCACTGGTCCTGAAGGACAGTTTTGTTAGTGAAACAGTTCAGATGTCATATTAAGTTAACACTAATTCCTCCTCAAGCGTTGCATCCGCACCGACCTGATTCAAACAAAGAACTGCAGGCGGCTGATTGCTACAGTAAAACATATGTTTGTAGagtatactgtaactgtatatTGTAACTGATGAAACAAGCCGAAACGCAGagcagacagctgtgtgtgtgtgtgtgtgtgcgctactGTAGTGTACGGGTTGACAGTATTGGATAATTGAAGTGATATCGGTAGCCTTTAAAGCATAACTTTGCAGATACAGCCATGATACTGCTCCGTATTCACGTACTGAGCCGCTTCTTTCAATTCGTGCAAAAATACAAACTCTGAGTAGATTTACCATTGACAGCGAATGGGACTAAATATTCCAACAGAGCTGATTTCGTAAGAAAATAAGAGCTAAACTAGGATTTTTGAATAAGTAAAAATTAAGTAAGAGAAGGGTATGAAAATAGTGTTCTCGTTCTTAACAACTCTTAACATTTAGGGCCCTGTCAGTTTGTTCATTTGTTCTCCCTCCAGTCACTGACTGAACTCTACAGATCAAGAGAAACTtgacataaaaaaaatgttaatgCAGGAGAGAACAACTTTACAGAAAGAGAACatgacaaacctttacagattaAATGAGGTATTGCAcagaatacaaataaaaaaaaaagcataaaGGCAACAAAAATATACAGCAAATCgataaaacatttacattatcATTTGAATAAGATTTAGAAAAACAATTTAGGAACAATGTAGTGTTGTCATAA
>TU1489144
CGAGTGTACAATTTAATAGTCCATTATTCTTCCAACCTCATTTCTGAAGGTTTGAGGTCCATATATCCTGGTTACTGAACAGTTTCACTAACCGTGAAAACAGACAGAGCGATACTGTAAAAAACAGCATTAGTTCCCTTCCCCAATGAGAAAGCAGTATCCCTCTGTGTAGAGACTAGGTTAGTTTCAATGGTAGATGAGTGTTAGTGTAGTTCACTGGTCCTGAAGGACAGTTTTGTTAGTGAAACAGTTCAGATGTCATATTAAGTTAACACTAATTCCTCCTCAAGCGTTGCATCCGCACCGACCTGATTCAAACAAAGAACTGCAGGCGGCTGATTGCTACAGTAAAACATATGTTTGTAGagtatactgtaactgtatatTGTAACTGATGAAACAAGCCGAAACGCAGagcagacagctgtgtgtgtgtgtgtgtgtgtgtgtgctactGTAGTGTACGGGTTGACAGTATTGGATAATTGAAGTGATATCGGTAGCCTTTAAAGCATAACTTTGCAGATACAGCCATGATACTGCTCCGTATTCACGTACTGAGCCGCTTCTTTCAATTCGTGCAAAAATACAAACTCTGAGTAGATTTACCATTGACAGCGAATGGGACTAAATATTCCAACAGAGCTGATTTCGTAAGAAAATAAGAGCTAAACTAGGATTTTTGAATAAGTAAAAATTAAGTAAGAGAAGGGTATGAAAATAGTGTTCTCGTTCTTAACAACTCTTAACATTTAGGGCCCTGTCAGTTTGTTCATTTGTTCTCCCTCCAGTCACTGACTGAACTCTACAGATCAAGAGAAACTtgacataaaaaaaatgttaatgCAGGAGAGAACAACTTTACAGAAAGAGAACatgacaaacctttacagattaAATGAGGTATTGCAcagaatacaaataaaaaaaaaagcataaaGGCAACAAAAATATACAGCAAATCgataaaacatttacattatcATTTGAATAAGATTTAGAAAAACAATTTAGGAACAATGTAGTGTTGTCATAA
>TU1489145
CGAGTGTACAATTTAATAGTCCATTATTCTTCCAACCTCATTTCTGAAGGTTTGAGGTCCATATATCCTGGTTACTGAACAGTTTCACTAACCGTGAAAACAGACAGAGCGATACTGTAAAAAACAGCATTAGTTCCCTTCCCCAATGAGAAAGCAGTATCCCTCTGTGTAGAGACTAGGTTAGTTTCAATGGTAGATGAGTGTTAGTGTAGTTCACTGGTCCTGAAGGACAGTTTTGTTAGTGAAACAGTTCAGATGTCATATTAAGTTAACACTAATTCCTCCTCAAGCGTTGCATCCGCACCGACCTGATTCAAACAAAGAACTGCAGGCGGCTGATTGCTACAGTAAAACATATGTTTGTAGagtatactgtaactgtatatTGTAACTGATGAAACAAGCCGAAACGCAGagcagacagctgtgtgtgtgtgtgtgtgtgtgtgcgctactGTAGTGTACGGGTTGACAGTATTGGATAATTGAAGTGATATCGGTAGCCTTTAAAGCATAACTTTGCAGATACAGCCATGATACTGCTCCGTATTCACGTACTGAGCCGCTTCTTTCAATTCGTGCAAAAATACAAACTCTGAGTAGATTTACCATTGACAGCGAATGGGACTAAATATTCCAACAGAGCTGATTTCGTAAGAAAATAAGAGCTAAACTAGGATTTTTGAATAAGTAAAAATTAAGTAAGAGAAGGGTATGAAAATAGTGTTCTCGTTCTTAACAACTCTTAACATTTAGGGCCCTGTCAGTTTGTTCATTTGTTCTCCCTCCAGTCACTGACTGAACTCTACAGATCAAGAGAAACTtgacataaaaaaaatgttaatgCAGGAGAGAACAACTTTACAGAAAGAGAACatgacaaacctttacagattaAATGAGGTATTGCAcagaatacaaataaaaaaaaaagcataaaGGCAACAAAAATATACAGCAAATCgataaaacatttacattatcATTTGAATAAGATTTAGAAAAACAATTTAGGAACAATGTAGTGTTGTCATAA
>TU1489147
CGAGTGTACAATTTAATAGTCCATTATTCTTCCAACCTCATTTCTGAAGGTTTGAGGTCCATATATCCTGGTTACTGAACAGTTTCACTAACCGTGAAAACAGACAGAGCGATACTGTAAAAAACAGCATTAGTTCCCTTCCCCAATGAGAAAGCAGTATCCCTCTGTGTAGAGACTAGGTTAGTTTCAATGGTAGATGAGTGTTAGTGTAGTTCACTGGTCCTGAAGGACAGTTTTGTTAGTGAAACAGTTCAGATGTCATATTAAGTTAACACTAATTCCTCCTCAAGCGTTGCATCCGCACCGACCTGATTCAAACAAAGAACTGCAGGCGGCTGATTGCTACAGTAAAACATATGTTTGTAGagtatactgtaactgtatatTGTAACTGATGAAACAAGCCGAAACGCAGagcagacagctgtgtgtgtgtgtgtgtgtgtgtgctactGTAGTGTACGGGTTGACAGTATTGGATAATTGAAGTGATATCGGTAGCCTTTAAAGCATAACTTTGCAGATACAGCCATGATACTGCTCCGTATTCACGTACTGAGCCGCTTCTTTCAATTCGTGCAAAAATACAAACTCTGAGTAGATTTACCATTGACAGCGAATGGGACTAAATATTCCAACAGAGCTGATTTCGTAAGAAAATAAGAGCTAAACTAGGATTTTTGAATAAGTAAAAATTAAGTAAGAGAAGGGTATGAAAATAGTGTTCTCGTTCTTAACAACTCTTAACATTTAGGGCCCTGTCAGTTTGTTCATTTGTTCTCCCTCCAGTCACTGACTGAACTCTACAGATCAAGAGAAACTtgacataaaaaaaatgttaatgCAGGAGAGAACAACTTTACAGAAAGAGAACatgacaaacctttacagattaAATGAGGTATTGCAcagaatacaaataaaaaaaaaagcataaaGGCAACAAAAATATACAGCAAATCgataaaacatttacattatcATTTGAATAAGATTTAGAAAAACAATTTAGGAACAATGTAGTGTTGTCATAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1489146 False 1114 lncRNA 0.38 2 52174990 52176123
TU1489143 False 1051 lncRNA 0.36 2 52175064 52176142
TU1489144 False 1036 lncRNA 0.37 2 52175064 52176123
TU1489145 False 1036 lncRNA 0.37 2 52175064 52176123
TU1489147 True 1034 lncRNA 0.37 2 52175064 52176123

Neighbor

gene id symbol gene type direction distance location
LOC110490745 LOC106576126 coding downstream 43952 52127987 ~ 52131038 (-)
LOC118936382 NA coding downstream 355139 51817108 ~ 51819851 (-)
LOC110490744 LOC106576129 coding downstream 382145 51785488 ~ 51793354 (-)
LOC110490266 LOC106609208 coding downstream 873493 51289611 ~ 51301497 (-)
LOC110490268 LOC106576083 coding downstream 887844 51280478 ~ 51287146 (-)
LOC110490277 LOC106576111 coding upstream 3277 52179419 ~ 52183904 (-)
LOC110490278 LOC106576113 coding upstream 16920 52193062 ~ 52203096 (-)
LOC118938894 cog5 coding upstream 31877 52208019 ~ 52278865 (-)
LOC110490281 NA coding upstream 161629 52337771 ~ 52347933 (-)
slco1c1 LOC106576120 coding upstream 199870 52376012 ~ 52437134 (-)
G1305350 NA non-coding downstream 3413 52161567 ~ 52171577 (-)
G1305341 NA non-coding downstream 25358 52149372 ~ 52149632 (-)
G1305325 NA non-coding downstream 25647 52115520 ~ 52149343 (-)
G1305096 NA non-coding downstream 62131 52112375 ~ 52112859 (-)
G1305062 NA non-coding downstream 144267 52030429 ~ 52030723 (-)
G1305368 NA non-coding upstream 29251 52205393 ~ 52207700 (-)
G1305417 NA non-coding upstream 115131 52291273 ~ 52291545 (-)
G1305423 NA non-coding upstream 124032 52300174 ~ 52300451 (-)
G1305427 NA non-coding upstream 128778 52304920 ~ 52305178 (-)
G1304988 NA other downstream 184817 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 252462 51921495 ~ 51922528 (-)
LOC110490264 LOC106576080 other downstream 969129 51199223 ~ 51205927 (-)
LOC110490244 LOC106609225 other downstream 1873983 50290050 ~ 50301082 (-)
LOC110490288 LOC106609184 other upstream 630841 52630838 ~ 52809711 (-)
G1306232 LOC106576137 other upstream 878707 53054849 ~ 53062280 (-)
efcab6 efcab6 other upstream 1580373 53756479 ~ 53786697 (-)
G1307309 NA other upstream 1723168 53899310 ~ 53922128 (-)
G1307473 NA other upstream 1973902 54150044 ~ 54150540 (-)

Expression


Co-expression Network