G1305524


Basic Information

Item Value
gene id G1305524
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52454734 ~ 52456997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1489344
aaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtaataccctctgtagtgccttgctgttggaggccgagcagttgccataccaggcagtgatgcaacccgtctgGATGCTctaaatggtgcagctgtaaaaccttttaaggatctgaggaccatgccaaatcttttcagtctcctgagggcaAATAGGTTTTGTAGTTCCCTCTTCACGacagtcttggtgtgcttggaccatgttagtttgttggtaatgtggatgCCAAGTAActcgaagctctcaacctgctccactacagccctgtcgatgagaatgggggcgtgctcgaccctccttttcctgtagtccacaattatctcctttgtcttgatcaggttaagggagaggttgttgtccttgcaccacacggtcaggtctctgacctcctcctccctataggctgtctcatcattgccggtgatcaggcctaccactgttgtatcatcagcaaacttaatgatggtgttggagtcttgcctggccgtgcagtcatgagtgaacagggagtacaggaggggactgagcacacacccctgaggggcccctgtgttgaggatcagcgtggcggatgtgttgttacctacccctaccacctggggggcggcccatcaggaagtccagaatctagttgcagagggaggtgtttagtccctgggtccttagcttagtgatgagctttgagggcactatggtgttgaacgctgagctgtagtcaatgaatagcattctcacataggtgttccaaTGCTAGCTTCTCTCTGTATCGGTAAACACAGGATTAATATGACCCGTGGCAACAGCACTGTGCGTCCCTGACACATGGATACAGTGTAGGGAGGCagcgggagaggggagggagggacagcagCAGAAGAaagaaggatgagagagggatgttgTGTGTCATACCGGATAATTGGTTTGTCTTTAAGTGACACtcgctgtgtctcaaatggcaccctttgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcgtgcgtggtcTGACAGTCCTCTGAGCGCCTAAAGAGAAAAACCCTTCAAATGTTTGTCCTCCAGAACATCTCTCCCTTCTTCATCTCTCTTTTTTTCATCCCTCCATTTCTACATGCGTATGTTTCCATACAGTTGTTTTGATCACATTTCACATTTCCGTATAGGTTAGTTATGTGGGGATTTTTGTTTTGTGGTATAATCGAAAGGCTGTGTTTATTCATAACATGCAAAGGTCAGCTACGTAACTGGTATGTGAGGGAGATTATACAGTATGTGTCGCGGCTATATGCGTGTGAGAACACAGTTATTCATGTGACTACCAATCAGATGAGAGGTTAGCTCTGTTTGCTCCTATTCCATCTGCCTGAGCTGGGGGAAgctcacacgcgcacacacacatacacacacatcaactGTAGACTGCCTCGTGCAATTACAAAGTCATGTGCAATTGTCTAGGGGAGCTCACTTGCACGCAATTCCAAAGTGTGTCATAATACATCCTATTCAGAACAGAACCTTAGATTAAGAATAACATCTTGGCATTTAGTATTTGACAAGGACGTGATAGTGGTCACATGCTCTTGTTGACACATTTCTTTCAGAGTACTACTATTGCCATAATTCCACCCAATCAGTGGGCAGCAGCAACTCTACAATAGGAACCAAACATGGACAATAGGGCATTGAAAGCATTGCGCTCCCGTGGTTTAAACAACAACAGGCACAGTTTGAAGCCCAACATCCTTCCTCAGACTTTGCTTCATGTTTTAACTCTGTCCTGTGTGATGTTTTTTTAGGCTATTGCCAGTTCTGTGCCATTCATTCTGTCTGTGTCCTAAATGACTCCCTATTGACCAGGTCCcaaatggctctggtcaaaagtagtgcactatacagtataGCGAATTGGGTGCCATTGGGAACGAACAATATGTCTCTGTTTGTGGGCATATGTTTGATCACGTTAGCCACAACGAGAACCAAACAAGCTTTACACGTTCTTAAACGAGACATATGAGACTTGTTTTATGTATTTATCTATAGCCGGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1489344 True 2212 lncRNA 0.46 2 52454734 52456997

Neighbor

gene id symbol gene type direction distance location
slco1c1 LOC106576120 coding downstream 17600 52376012 ~ 52437134 (-)
LOC110490281 NA coding downstream 106801 52337771 ~ 52347933 (-)
LOC118938894 cog5 coding downstream 175869 52208019 ~ 52278865 (-)
LOC110490278 LOC106576113 coding downstream 251638 52193062 ~ 52203096 (-)
LOC110490277 LOC106576111 coding downstream 270830 52179419 ~ 52183904 (-)
LOC110490286 LOC106576121 coding upstream 3556 52460553 ~ 52545171 (-)
LOC118938978 NA coding upstream 152174 52609171 ~ 52609300 (-)
LOC110490287 LOC106576122 coding upstream 153728 52610725 ~ 52628311 (-)
LOC110490288 LOC106609184 coding upstream 173841 52630838 ~ 52809711 (-)
LOC110490289 NA coding upstream 196377 52653374 ~ 52656938 (-)
G1305466 NA non-coding downstream 60561 52360120 ~ 52394173 (-)
G1305442 NA non-coding downstream 123000 52331422 ~ 52331734 (-)
G1305436 NA non-coding downstream 139360 52315153 ~ 52315374 (-)
G1305434 NA non-coding downstream 141781 52312736 ~ 52312953 (-)
G1305427 NA non-coding downstream 149556 52304920 ~ 52305178 (-)
G1305535 NA non-coding upstream 21452 52478449 ~ 52478723 (-)
G1305561 NA non-coding upstream 57532 52514529 ~ 52514753 (-)
G1305565 NA non-coding upstream 64258 52521255 ~ 52521476 (-)
G1305566 NA non-coding upstream 64924 52521921 ~ 52522173 (-)
G1305568 NA non-coding upstream 67236 52524233 ~ 52524467 (-)
G1304988 NA other downstream 464561 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 532206 51921495 ~ 51922528 (-)
LOC110490744 LOC106576129 other downstream 661380 51785488 ~ 51793354 (-)
LOC110490264 LOC106576080 other downstream 1248873 51199223 ~ 51205927 (-)
LOC110490244 LOC106609225 other downstream 2153727 50290050 ~ 50301082 (-)
G1306232 LOC106576137 other upstream 597852 53054849 ~ 53062280 (-)
efcab6 efcab6 other upstream 1299518 53756479 ~ 53786697 (-)
G1307309 NA other upstream 1442313 53899310 ~ 53922128 (-)
G1307473 NA other upstream 1693047 54150044 ~ 54150540 (-)

Expression


Co-expression Network