G1305800


Basic Information

Item Value
gene id G1305800
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52609396 ~ 52707243 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1489636
tttgtcgatatcggtgtggaagaacttgactggcctgcacagagccctgacctccacTCCATTgaacctttgggattaattggaacgcagactgtgagccaggcctaatcaccccacatcagtgcccgacctcactaatgctcttgtggctgaatggaaacaagtccctgcagcaatgttccaacgtcgagtgaaaagccttcccagaagagtggaggctgttatagcagaaaagggggggacgaactccatattaatgcccatgattttggaatgagatgttctacgagcaggtgtccacatacttttggtcatgtagtgtaggccaaatgttttatatactaGGTGCTGAACATTTGAGCTATTTTGGGGGTGTTTTAGTTAATGCAACTAGACTGCGAGCTTAACAGCACAGTTACTTGATGTTGTAGAGACCTAGTTGCATTTTGTAGAGAAACGTGTCTTTGTAAATACTCCTGGAGATTGGTAATATATTTTTATACCTGGAAATTGTACTGTAGATGTTTTATTATTTCtgctccattaaaaaaaaaaattaaaaaaattaaaaaggttTTAAACTGTAATAATTGTACATAATGCAATAGGAAAATAGTTAGGAAAATAGGCTGTTAAGTGCACCCGGTTTCTGTCTGACACTAGCTAGGTGAATTGTACTGTCAAATCTTCTGATAGTTAAGATGATGATGAGGAAGTTgtaaggcctgtgtgtgtgtttctgtacgtTATCTTTGTGCTGCTGGCAATAGGCAAGTAATAACAGTAttattaacccctctctctctccagtcctctgtcAGTCTGGCTAACTGACCTCTGCATGTTAGTGTCCGCAGGGAATGGAGATGATCATGTTGAACTATACAGTAGGACTGTTCTTCACGGTCTGTCTGAATAGCTACCGAagtcgtgtgtgtatgtgtgtgtagaggtcCATTATAACATGGCAtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1489636 True 972 lncRNA 0.41 2 52609396 52707243

Neighbor

gene id symbol gene type direction distance location
LOC118938978 NA coding downstream 96 52609171 ~ 52609300 (-)
LOC110490286 LOC106576121 coding downstream 64225 52460553 ~ 52545171 (-)
slco1c1 LOC106576120 coding downstream 172262 52376012 ~ 52437134 (-)
LOC110490281 NA coding downstream 261463 52337771 ~ 52347933 (-)
LOC118938894 cog5 coding downstream 330531 52208019 ~ 52278865 (-)
LOC110490291 LOC106609175 coding upstream 314028 53021271 ~ 53029431 (-)
LOC110490294 utp20 coding upstream 328408 53034589 ~ 53040657 (-)
LOC118938980 NA coding upstream 330089 53037332 ~ 53037459 (-)
LOC110490297 LOC106576136 coding upstream 347603 53054846 ~ 53062315 (-)
LOC110490299 LOC106576137 coding upstream 353707 53060950 ~ 53062801 (-)
G1305802 NA non-coding downstream 1932 52607119 ~ 52607464 (-)
G1305655 NA non-coding downstream 11447 52597706 ~ 52597949 (-)
G1305653 NA non-coding downstream 12570 52596619 ~ 52596826 (-)
G1305595 NA non-coding downstream 53663 52555508 ~ 52555733 (-)
G1305585 NA non-coding downstream 69399 52539767 ~ 52539997 (-)
LOC110490288 LOC106609184 non-coding upstream 29338 52630838 ~ 52809711 (-)
G1305873 NA non-coding upstream 34922 52742165 ~ 52742559 (-)
G1305881 NA non-coding upstream 47459 52754702 ~ 52755086 (-)
G1305897 NA non-coding upstream 110565 52817808 ~ 52818188 (-)
G1305898 NA non-coding upstream 112058 52819301 ~ 52819553 (-)
G1304988 NA other downstream 619223 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 686868 51921495 ~ 51922528 (-)
LOC110490744 LOC106576129 other downstream 816042 51785488 ~ 51793354 (-)
LOC110490264 LOC106576080 other downstream 1403535 51199223 ~ 51205927 (-)
LOC110490244 LOC106609225 other downstream 2308389 50290050 ~ 50301082 (-)
G1306232 LOC106576137 other upstream 347606 53054849 ~ 53062280 (-)
efcab6 efcab6 other upstream 1049272 53756479 ~ 53786697 (-)
G1307309 NA other upstream 1192067 53899310 ~ 53922128 (-)
G1307473 NA other upstream 1442801 54150044 ~ 54150540 (-)

Expression


Co-expression Network