G1306222 (LOC106609171)


Basic Information

Item Value
gene id G1306222
gene name LOC106609171
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53016633 ~ 53017896 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1490108
GCCCGGAGGATCAGGGCGGAGTGGCAGTCTAGACACACCTTGTTCACCTTGTTGCCATCGTACTCCAGAGTTACTTTGTtgtctgaacacctccaaaacaccaCCTGACAGACAGGTGGACACACAGGAGGTCATGGTCATATCGGTCTGGTTATGTTAGAAAGAACGGAAGTACAACACTGAACGTGAATGCCATTTCAACTAATCATAACCTCACCCCAGCCTTAGGTAAAGTGAATGtgaagtgtgtgttgtgtgtacgtgtgtgttaaCTCACACAGCCACAGGCTCTGCAGTGGTGTCTCCATCGGGTGAGGGCGTTGAAGGGTTCTCTACACTTCATACACATGGTCACCTCATTGTCCCTGATCCATCGAGGGGCACGCCGACCCAGCTCCTCCATCTGTTCACGCACACAGGAACAAAGACCAACACTCAAAATCAGTTCAGTCTCGCCATGTTGTTTTACCACCCGTACATGCAAGAGGATCTCAAATTAGTTGTTTCTCCTTCCCTTTTGCTAAATGATCAGTTCCCCTCCACACCCATTTGCCTGTGATTTATCCCTCTATATTAATTCAGGGAGCATACCGTACAGATGGAGGAACACACACAAAAGAATGGAAGAAAACATTCTATCAGTCTCTGTTTTGCACAAAAATAAAGGATCCTTACAGATACCTCTACTTCTTTAGAAGTTGACTTAAAAGTGTCATTCTTCTGTCGGAAAACATCAATAGTGTCCTGGAAAGCCTGAAAGTACAAGGCACGTCAGACCATGTGTACTCTCTCTATATACTCATCATGTGCCATTGGTCATTTAAACATGTTTCAAAATGTGACAAAGCACTGTTACCTTTAACCAGTCCTCTTCGTCTTGTTCAGAGCTGGAAAGACAAAGCCACATGTTAACATTTATACAAAACATATACACATCCATCCAAGACCTTCAGGTGAGTTATATTATTGTGACACCCCCCTCACCTGGCCTGTAGGTCCAGGGTCCTCTCCAGGGTCATCTCCTTGCCAGACACCTGGAAGGTGTGGGGGTGGTGTTCGTTGGTGGTGCGCTGCACCGTCATGCCCTCCACGTCAATCCGTGTCCGCACGGTGAACCGCTGCCCCCCCAGGCTGAACCGAGGAGTGCAGCACAGCAGCATGTTGTTGAACTGGATGGACAGCAGGGGGGCAAGAAAGACATGAGGGTTTTAAGTATGAGCCACAAGAGTCTCCTGAATGAGCCGTTAATGCaggagtgtcaaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1490108 True 1264 lncRNA 0.48 1 53016633 53017896

Neighbor

gene id symbol gene type direction distance location
LOC110490288 LOC106609184 coding downstream 206922 52630838 ~ 52809711 (-)
LOC110490289 NA coding downstream 359695 52653374 ~ 52656938 (-)
LOC110490287 LOC106576122 coding downstream 388322 52610725 ~ 52628311 (-)
LOC118938978 NA coding downstream 407333 52609171 ~ 52609300 (-)
LOC110490286 LOC106576121 coding downstream 471462 52460553 ~ 52545171 (-)
LOC110490291 LOC106609175 coding upstream 3375 53021271 ~ 53029431 (-)
LOC110490294 utp20 coding upstream 17755 53034589 ~ 53040657 (-)
LOC118938980 NA coding upstream 19436 53037332 ~ 53037459 (-)
LOC110490297 LOC106576136 coding upstream 36950 53054846 ~ 53062315 (-)
LOC110490299 LOC106576137 coding upstream 43054 53060950 ~ 53062801 (-)
G1306217 LOC106609171 non-coding downstream 2196 53013902 ~ 53014437 (-)
G1306216 NA non-coding downstream 2835 53012943 ~ 53013798 (-)
G1306195 NA non-coding downstream 7744 53006526 ~ 53008889 (-)
G1306198 NA non-coding downstream 37834 52978511 ~ 52978799 (-)
G1306192 NA non-coding downstream 40324 52975746 ~ 52976309 (-)
G1306233 NA non-coding upstream 39527 53057423 ~ 53150195 (-)
G1306242 NA non-coding upstream 57297 53075193 ~ 53142075 (-)
G1306283 NA non-coding upstream 136719 53154615 ~ 53155065 (-)
G1306547 NA non-coding upstream 219240 53237136 ~ 53237399 (-)
G1304988 NA other downstream 1026460 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 1094105 51921495 ~ 51922528 (-)
LOC110490744 LOC106576129 other downstream 1223279 51785488 ~ 51793354 (-)
LOC110490264 LOC106576080 other downstream 1810772 51199223 ~ 51205927 (-)
G1306232 LOC106576137 other upstream 36953 53054849 ~ 53062280 (-)
efcab6 efcab6 other upstream 738619 53756479 ~ 53786697 (-)
G1307309 NA other upstream 881414 53899310 ~ 53922128 (-)
G1307473 NA other upstream 1132148 54150044 ~ 54150540 (-)
G1307901 NA other upstream 1749076 54766972 ~ 54768422 (-)

Expression


Co-expression Network