G1306232 (LOC106576137)


Basic Information

Item Value
gene id G1306232
gene name LOC106576137
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53054849 ~ 53062280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1490120
GTTTATTAACTCCTATTTGAACTCGTGTGGACGAAGGGCGAAGTAACCAGCTATCGACACTACTTAATTGCAAGGATTTATTGACAAGGGACATTATAATTAGTGAAGGCTGCTACGGTCTCAGGCAGTGACATGGCCAACCCTCTGAGGAGTGAGGTTAGACAGCTGTACAAGAATCTCCTGTTTTTGGGACGGGAATACCCCAAAGGCGCAGACTACTTCAGGGAACGTCTGAAGGGTGCCTTTATGAAGAACAAAGATGTCACAGACCCTAAGGAGATCAAAAAGCTAGTCGACCGTGGGGAGTTTGTGATCAAGGAACTGGAGGCCCTGTACTATCTGAGGAAGTACAGAGCCATGAAGAAGCGTTACTACGAAGAAGAATTGTCCGCCGTGCTGAATATAGGCAGACCGGTAGACTGATAACCTAGCTATTTGGTGGCTGAATCTTCAGTGTGCAAGTTTTAGTTTAGCCGTCCCTGAACAAGAGTGTTATTAGCAACACAAACGTCCTTAATTAAACAGAAATGTTAGGTATATATTACAGACAAGTGTTATGAGCCACACTTGCCACCCACCTCGAGCTGTGGAATGACATCCACCAAATGACTTCATACAGTTCAAATGACTACAGTTCTCTCGTGTACATAATTGTAAATAATACATGATAGAATGTATTGATAGCGTGTACAATGTAATTTAATTATATAAATGAGACACGGCTATTACAAATTAATGTTTATTTTAAATGTACAACACTGATAGTCCTATTTTTGAAATGAATGAGAAACAAGTCAAGTCAAAGATATTTCATTTTTAACAATCCTAACTTTGTGTCTTTTCAAGTTGATGTGATGTAGGctactacatacagtaccttcagaaagtattcacacccattgcctttttccacattttgttgtgttacagcctgaatttaaaatgtattaaatttagaTTTGTTTGTCAGTGGGCTACAGAAATTACCCTATAATGTCAATGGAATTACCCTATAATGTCAATGGAATTATCTTTGAAATTAACAGATTCATTAAAAATAAAGCTGTcatgttttgagtcaa
>TU1490122
GTTTATTAACTCCTATTTGAACTCGTGTGGACGAAGGGCGAAGTAACCAGCTATCGACACTACTTAATTGCAAGGATTTATTGACAAGGGACATTATAATTGAAGGCTGCTACGGTCTCAGGCAGTGACATGGCCAACCCTCTGAGGAGTGAGGTTAGACAGCTGTACAAGAATCTCCTGTTTTTGGGACGGGAATACCCCAAAGGCGCAGACTACTTCAGGGAACGTCTGAAGGGTGCCTTTATGAAGAACAAAGATGTCACAGACCCTAAGGAGATCAAAAAGCTAGTCGACCGTGGGGAGTTTGTGATCAAGGAACTGGAGGCCCTGTACTATCTGAGGAAGTACAGAGCCATGAAGAAGCGTTACTACGAAGAAGAATTGTCCGCCGTGCTGAATATAGGCAGACCGGTAGACTGATAACCTAGCTATTTGGTGGCTGAATCTTCAGTGTGCAAGTTTTAGTTTAGCCGTCCCTGAACAAGAGTGTTATTAGCAACACAAACGTCCTTAATTAAACAGAAATGTTAGGTATATATTACAGACAAGTGTTATGAGCCACACTTGCCACCCACCTCGAGCTGTGGAATGACATCCACCAAATGACTTCATACAGTTCAAATGACTACAGTTCTCTCGTGTACATAATTGTAAATAATACATGATAGAATGTATTGATAGCGTGTACAATGTAATTTAATTATATAAATGAGACACGGCTATTACAAATTAATGTTTATTTTAAATGTACAACACTGATAGTCCTATTTTTGAAATGAATGAGAAACAAGTCAAGTCAAAGATATTTCATTTTTAACAATCCTAACTTTGTGTCTTTTCAAGTTGATGTGATGTAGGctactacatacagtaccttcagaaagtattcacacccattgcctttttccacattttgttgtgttacagcctgaatttaaaatgtattaaatttagaTTTGTTTGTCAGTGGGCTACAGAAATTACCCTATAATGTCAATGGAATTACCCTATAATGTCAATGGAATTATCTTTGAAATTAACAGATTCATTAAAAATAAAGCTGTcatgttttgagtcaa
>TU1490123
TGTTTGACGTAATCCTTCCATGTAGCCAGTTTTCAGCAAGACAGATAGCGTTCAGCACAGCACTGCGAGGATTTTATCGATAAGGGAGCCTAGCGATAATTAGTGAAGGCTGCTACGGTCTCAGGCAGTGACATGGCCAACCCTCTGAGGAGTGAGGTTAGACAGCTGTACAAGAATCTCCTGTTTTTGGGACGGGAATACCCCAAAGGCGCAGACTACTTCAGGGAACGTCTGAAGGGTGCCTTTATGAAGAACAAAGATGTCACAGACCCTAAGGAGATCAAAAAGCTAGTCGACCGTGGGGAGTTTGTGATCAAGGAACTGGAGGCCCTGTACTATCTGAGGAAGTACAGAGCCATGAAGAAGCGTTACTACGAAGAAGAATTGTCCGCCGTGCTGAATATAGGCAGACCGGTAGACTGATAACCTAGCTATTTGGTGGCTGAATCTTCAGTGTGCAAGTTTTAGTTTAGCCGTCCCTGAACAAGAGTGTTATTAGCAACACAAACGTCCTTAATTAAACAGAAATGTTAGGTATATATTACAGACAAGTGTTATGAGCCACACTTGCCACCCACCTCGAGCTGTGGAATGACATCCACCAAATGACTTCATACAGTTCAAATGACTACAGTTCTCTCGTGTACATAATTGTAAATAATACATGATAGAATGTATTGATAGCGTGTACAATGTAATTTAATTATATAAATGAGACACGGCTATTACAAATTAATGTTTATTTTAAATGTACAACACTGATAGTCCTATTTTTGAAATGAATGAGAAACAAGTCAAGTCAAAGATATTTCATTTTTAACAATCCTAACTTTGTGTCTTTTCAAGTTGATGTGATGTAGGctactacatacagtaccttcagaaagtattcacacccattgcctttttccacattttgttgtgttacagcctgaatttaaaatgtattaaatttagaTTTGTTTGTCAGTGGGCTACAGAAATTACCCTATAATGTCAATGGAATTACCCTATAATGTCAATGGAATTATCTTTGAAATTAACAGATTCATTAAAAATAAAGCTGTcatgttttgagtcaa
>TU1490119
TGTTTGACGTAATCCTTCCATGTAGCCAGTTTTCAGCAAGACAGATAGCGTTCAGCACAGCACTGCGAGGATTTTATCGATAAGGGAGCCTAGCGATAATTGGTGAAGGCTGATTCTGTCTCAGGCAGTGACATGGCCAACCCtctgaggagagaggttagaCAGCTGTACAAGAATCTACTGTATCTGGGACGGGAATACCCCCAAGGAGCAGACTACTTCAGGGAGCGTCTGAACAGTGCCTTTGTGAAGAACAAATATGTCACAGACCCCAAGGAGATCAGAAAGCTTGTTGATTGTGGAGAGGATGTGATTAAGGAACTGGGGACCCTGTACTATCTGAAGGAATATAGCGCCATGAAAAAGCGTTTCTACGAAGAAGAATTGTTAGGCCTGCTGAATATAGGCAGACCGACAGACTGATAGCCTAGATGTTTGGCAGCTGAATCTTCAGTATGCGGGtggaccagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaattaaaaaaaatagagAACATTTTGGGTAGTGTAACTTGGTCCCCCAAAAATATtgttttcacctcattttaacattctgtcataaagtgCACATGTCCAACTTTCTAAAAACATTTGTTTCCATGTCAAGGGCTTAAATAAAACTAATGACTAGTAAGTGCCATTAAAGAA
>TU1490121
TGTTTGACGTAATCCTTCCATGTAGCCAGTTTTCAGCAAGACAGATAGCGTTCAGCACAGCACTGCGAGGATTTTATCGATAAGGGAGCCTAGCGATAATGTAATGAAAACTAAATTATATCGTGTGAATAAATCGACTAATAATAAAGCAAATTACTGTTTTTATAACCGAGGGTGTTTAGCCAATTACGTTACTATTAGCTggctaatcattcgctttaccaccTAGCCGTAGACTTTGTACTGTTACCTAACCTACCTGCTAAGTGAACAAAGTGGTGAAGGCTGATTCTGTCTCAGGCAGTGACATGGCCAACCCtctgaggagagaggttagaCAGCTGTACAAGAATCTACTGTATCTGGGACGGGAATACCCCCAAGGAGCAGACTACTTCAGGGAGCGTCTGAACAGTGCCTTTGTGAAGAACAAATATGTCACAGACCCCAAGGAGATCAGAAAGCTTGTTGATTGTGGAGAGGATGTGATTAAGGAACTGGGGACCCTGTACTATCTGAAGGAATATAGCGCCATGAAAAAGCGTTTCTACGAAGAAGAATTGTTAGGCCTGCTGAATATAGGCAGACCGACAGACTGATAGCCTAGATGTTTGGCAGCTGAATCTTCAGTATGCGGGtggaccagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaattaaaaaaaatagagAACATTTTGGGTAGTGTAACTTGGTCCCCCAAAAATATtgttttcacctcattttaacattctgtcataaagtgCACATGTCCAACTTTCTAAAAACATTTGTTTCCATGTCAAGGGCTTAAATAAAACTAATGACTAGTAAGTGCCATTAAAGAA

Function

NR:

description
electron transfer flavoprotein regulatory factor 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1490120 False 1082 TUCP 0.38 3 53054849 53056536
TU1490122 False 1079 TUCP 0.38 3 53054849 53056536
TU1490123 False 1082 TUCP 0.39 3 53054849 53062280
TU1490119 False 793 TUCP 0.43 3 53060964 53062280
TU1490121 True 969 TUCP 0.41 3 53060964 53062280

Neighbor

gene id symbol gene type direction distance location
LOC110490294 utp20 coding downstream 14192 53034589 ~ 53040657 (-)
LOC118938980 NA coding downstream 17390 53037332 ~ 53037459 (-)
LOC110490291 LOC106609175 coding downstream 25418 53021271 ~ 53029431 (-)
LOC110490288 LOC106609184 coding downstream 245138 52630838 ~ 52809711 (-)
LOC110490289 NA coding downstream 397911 52653374 ~ 52656938 (-)
lrmp LOC106576138 coding upstream 23367 53085647 ~ 53109210 (-)
etnk1 LOC106609326 coding upstream 465941 53528016 ~ 53548231 (-)
aldh1l2 LOC106576152 coding upstream 492758 53555038 ~ 53576166 (-)
LOC110490308 LOC106576153 coding upstream 516559 53578839 ~ 53584339 (-)
efcab6 efcab6 coding upstream 694199 53756479 ~ 53786697 (-)
G1306222 LOC106609171 non-coding downstream 36953 53016633 ~ 53017896 (-)
G1306217 LOC106609171 non-coding downstream 40412 53013902 ~ 53014437 (-)
G1306216 NA non-coding downstream 41051 53012943 ~ 53013798 (-)
G1306195 NA non-coding downstream 45960 53006526 ~ 53008889 (-)
G1306242 NA non-coding upstream 12913 53075193 ~ 53142075 (-)
G1306283 NA non-coding upstream 92335 53154615 ~ 53155065 (-)
G1306547 NA non-coding upstream 174856 53237136 ~ 53237399 (-)
G1306548 NA non-coding upstream 176567 53238847 ~ 53239190 (-)
G1306552 NA non-coding upstream 185911 53248191 ~ 53248700 (-)
G1304988 NA other downstream 1064676 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 1132321 51921495 ~ 51922528 (-)
LOC110490744 LOC106576129 other downstream 1261495 51785488 ~ 51793354 (-)
LOC110490264 LOC106576080 other downstream 1848988 51199223 ~ 51205927 (-)
G1307309 NA other upstream 837030 53899310 ~ 53922128 (-)
G1307473 NA other upstream 1087764 54150044 ~ 54150540 (-)
G1307901 NA other upstream 1704692 54766972 ~ 54768422 (-)
LOC110490337 LOC106609287 other upstream 2086495 55148760 ~ 55155353 (-)

Expression


Co-expression Network