G1306344



Basic Information


Item Value
gene id G1306344
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53249661 ~ 53249944 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1490329
CTCACTCatactttctctctcactctgtccctctaaTTCACTCACTCTAATGCCCTGGCTCATACTCTCTCTAACTCaatcagtcactcactcagtcactcactaaGTCACTCGCTCTCATGCTAACTGGCTCCTTCACTCTCCTTTACCTCGTCTCACAGCATAACCTTTCTATGTATTTCTCTGGTTAGGCCTCCATTTGTCATTTTCGCGTGTGCCAGGCTATCCAGGGAAAGTCAACTTGGTAAGGTGTCGTATTCTCACATGGGGAGAGGGAACACAAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1490329 True 284 lncRNA 0.47 1 53249661 53249944

Neighbor


gene id symbol gene type direction distance location
bcat1 LOC106576140 coding upstream 107870 53114950 ~ 53141791 (+)
cfap94 casc1 coding upstream 163501 53077695 ~ 53086160 (+)
LOC110490748 slc5a8 coding upstream 196255 53045349 ~ 53053406 (+)
LOC110490293 LOC106609177 coding upstream 213944 53029636 ~ 53035717 (+)
LOC110490746 LOC106609171 coding upstream 228413 53008490 ~ 53021248 (+)
sox5 LOC106576150 coding downstream 102804 53352462 ~ 53471763 (+)
c15h12orf45 LOC106609327 coding downstream 302254 53552198 ~ 53554958 (+)
scube1 LOC106576154 coding downstream 335115 53585059 ~ 53728823 (+)
trnak-cuu-7 NA coding downstream 450352 53700296 ~ 53700368 (+)
mpped1 LOC106576156 coding downstream 456524 53706468 ~ 53755855 (+)
G1306342 NA non-coding upstream 1447 53247760 ~ 53248214 (+)
G1306340 NA non-coding upstream 2913 53240215 ~ 53246748 (+)
G1306339 NA non-coding upstream 9612 53239760 ~ 53240049 (+)
G1306321 NA non-coding upstream 36726 53212698 ~ 53212935 (+)
G1306297 NA non-coding upstream 37419 53172623 ~ 53212242 (+)
G1306348 NA non-coding downstream 6828 53256772 ~ 53256971 (+)
G1306357 NA non-coding downstream 13675 53263619 ~ 53264011 (+)
G1306361 NA non-coding downstream 20015 53269959 ~ 53270172 (+)
G1306364 NA non-coding downstream 24220 53274164 ~ 53274467 (+)
G1306373 NA non-coding downstream 36791 53286735 ~ 53286973 (+)
G1305302 NA other upstream 736611 52512629 ~ 52513050 (+)
G1304886 NA other upstream 1334651 51914597 ~ 51915010 (+)
G1304083 NA other upstream 1596661 51584754 ~ 51653000 (+)
LOC110490271 LOC106576088 other upstream 1851699 51386269 ~ 51404401 (+)
atxn7l1 LOC106576087 other upstream 1890174 51351361 ~ 51382579 (+)
G1306708 NA other downstream 330597 53580541 ~ 53583352 (+)
LOC110490314 LOC106576157 other downstream 639284 53875911 ~ 53890829 (+)
LOC110490339 LOC106576184 other downstream 1908062 55157706 ~ 55170847 (+)
G1308238 NA other downstream 2013014 55262958 ~ 55278451 (+)

Expression



Co-expression Network