G1306361


Basic Information

Item Value
gene id G1306361
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53269959 ~ 53270172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1490346
gaggacccgtcgcgcacctatacaaccATAAAACAACACtgacataaaacaatctctgacaaagacatgaggggaaacagagggttaaatacacaacaggtaatgaatgggattgaaaccaggtgtgtgggaagacaagacaaaaccaatggaaaatgaaaaatggatcaatgatggctagaagaccggtgacgtcgaccgccgagcaccgccc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1490346 True 214 lncRNA 0.46 1 53269959 53270172

Neighbor

gene id symbol gene type direction distance location
bcat1 LOC106576140 coding upstream 128168 53114950 ~ 53141791 (+)
cfap94 casc1 coding upstream 183799 53077695 ~ 53086160 (+)
LOC110490748 slc5a8 coding upstream 216553 53045349 ~ 53053406 (+)
LOC110490293 LOC106609177 coding upstream 234242 53029636 ~ 53035717 (+)
LOC110490746 LOC106609171 coding upstream 248711 53008490 ~ 53021248 (+)
sox5 LOC106576150 coding downstream 82576 53352462 ~ 53471763 (+)
c15h12orf45 LOC106609327 coding downstream 282026 53552198 ~ 53554958 (+)
scube1 LOC106576154 coding downstream 314887 53585059 ~ 53728823 (+)
trnak-cuu-7 NA coding downstream 430124 53700296 ~ 53700368 (+)
mpped1 LOC106576156 coding downstream 436296 53706468 ~ 53755855 (+)
G1306357 NA non-coding upstream 5948 53263619 ~ 53264011 (+)
G1306348 NA non-coding upstream 12988 53256772 ~ 53256971 (+)
G1306344 NA non-coding upstream 20015 53249661 ~ 53249944 (+)
G1306342 NA non-coding upstream 21745 53247760 ~ 53248214 (+)
G1306340 NA non-coding upstream 23211 53240215 ~ 53246748 (+)
G1306364 NA non-coding downstream 3992 53274164 ~ 53274467 (+)
G1306373 NA non-coding downstream 16563 53286735 ~ 53286973 (+)
G1306385 NA non-coding downstream 26821 53296993 ~ 53297366 (+)
G1306386 NA non-coding downstream 27913 53298085 ~ 53298308 (+)
G1306389 NA non-coding downstream 33745 53303917 ~ 53304282 (+)
G1305302 NA other upstream 756909 52512629 ~ 52513050 (+)
G1304886 NA other upstream 1354949 51914597 ~ 51915010 (+)
G1304083 NA other upstream 1616959 51584754 ~ 51653000 (+)
LOC110490271 LOC106576088 other upstream 1871997 51386269 ~ 51404401 (+)
atxn7l1 LOC106576087 other upstream 1910472 51351361 ~ 51382579 (+)
G1306708 NA other downstream 310369 53580541 ~ 53583352 (+)
LOC110490314 LOC106576157 other downstream 619056 53875911 ~ 53890829 (+)
LOC110490339 LOC106576184 other downstream 1887834 55157706 ~ 55170847 (+)
G1308238 NA other downstream 1992786 55262958 ~ 55278451 (+)

Expression


Co-expression Network