G1306708


Basic Information

Item Value
gene id G1306708
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53580541 ~ 53583352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1490729
GTTGAGGTTGCACAGGTTCCCAGCGTTGAGGAAGAAGTGTGTCCTGAAGAGGTCTCCGAAGCCGGCCCGGCCCGGACGGAAGGGTAGAGGAGTGTACAGGTGGAGCCCGCCTGCCCAGTACGCCTCTCCTCCCAGGTAGTCACCCTCGCTCTGTGGGCCGATGCTGTACATTCCAAAACCTCGCACACTGGTGGGACCGCCCAGATAGAACCTGTCAGCGATGGAGGACGGTCTGCCTCCGATGGGGAGGAGACACCCACCCCAGAGGGAGGCGGAGAGGACCGAGTCCCAGACCAGCCGTCTGTTGACCTGCAGCTCAAAGTCCTCCTTCAGGAAGCTGGCGTCTCCGCCTGTATAGCCAGCCAGCTCctGGTTGATCCTCAGTAAGGCACCTTTCTTGGGGAAGATGGCAGAGTTCCTGGTGTCAATGGACATGGTGTGCGAGAGGGCAGACTTGAGGGTGTGCCCGCTCTCTTCTCGCACGGCAAAGGAGGCACTGCGTGCCAGACAGCCCAGCTCCCTCCACACACCCTCCCACTTCAGAGTGTGGTTGGTCCTCCACAGAGGAAaATTGAGCTCAGTGGagactcctctgtctgtctctttgagGGAGCTCCATGGAAACTGGCCTGTGACTTTGTACAGGTTTAGAGCGAGGTTGCGTTCAAAGTTGCCTGGCTGGGGCTTGAAGAAGGACAGGCCGTAGGAAGTCTCCTTAGTCCCGTAGGAAAACTGGAAGGTTAACTTCTCCGCACGGCCAAACACGTTAGGAAGCTTCACACCCAACACCATGCTGCCTTCGTTGTTGCCGACCATGGTGTTGTAGCTGCCCGTCAGCCTCTTCATCTCTGTCACCTCGAACGTCACGTCCAGACCATTGGGCAACGCATCCGCACCATCTGATGTATCTATGACAACCTCCACCTCTTTGAAAATGCCCAGACGCAGCAGTTTCTGTCTGGCAATATGAGACTT
>TU1490727
tagaccgctgcgccacttgggaggcctgcAAGTGCTATTTCAATGTCCTATTGACACAGAAAGCAAGGACAGAGGTGTTCCCTGTTCGTACTTGCGTTCAAAGTTGCCTGGCTGGGGCTTGAAGAAGGACAGGCCGTAGGAAGTCTCCTTAGTCCCGTAGGAAAACTGGAAGGTTAACTTCTCCGCACGGCCAAACACGTTAGGAAGCTTCACACCCAACACCATGCTGCCTTCGTTGTTGCCGACCATGGTGTTGTAGCTGCCCGTCAGCCTCTTCATCTCTGTCACCTCGAACGTCACGTCCAGACCATTGGGCAACGCATCCGCACCATCTGATGTATCTATGACAACCTCCACCTCTTTGAAAATGCCCAGACGCAGCAGTTTCTGTCTGGCAATATGAGACTT

Function

NR:

description
sorting and assembly machinery component 50 homolog B-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1490729 False 975 TUCP 0.57 10 53580541 53583352
TU1490727 True 408 lncRNA 0.52 3 53582548 53583352

Neighbor

gene id symbol gene type direction distance location
c15h12orf45 LOC106609327 coding upstream 27590 53552198 ~ 53554958 (+)
sox5 LOC106576150 coding upstream 110785 53352462 ~ 53471763 (+)
bcat1 LOC106576140 coding upstream 440757 53114950 ~ 53141791 (+)
cfap94 casc1 coding upstream 496388 53077695 ~ 53086160 (+)
LOC110490748 slc5a8 coding upstream 529142 53045349 ~ 53053406 (+)
scube1 LOC106576154 coding downstream 1707 53585059 ~ 53728823 (+)
trnak-cuu-7 NA coding downstream 116944 53700296 ~ 53700368 (+)
mpped1 LOC106576156 coding downstream 123116 53706468 ~ 53755855 (+)
LOC110490313 LOC106576157 coding downstream 244786 53828138 ~ 53859559 (+)
LOC110490314 LOC106576157 coding downstream 292559 53875911 ~ 53890829 (+)
G1306411 NA non-coding upstream 250812 53331156 ~ 53331736 (+)
G1306390 NA non-coding upstream 277675 53304663 ~ 53304873 (+)
G1306389 NA non-coding upstream 278266 53303917 ~ 53304282 (+)
G1306386 NA non-coding upstream 284240 53298085 ~ 53298308 (+)
G1306723 NA non-coding downstream 6382 53589734 ~ 53629404 (+)
G1306755 NA non-coding downstream 91957 53675309 ~ 53710289 (+)
G1306852 NA non-coding downstream 346453 53929805 ~ 53930980 (+)
G1305302 NA other upstream 1069498 52512629 ~ 52513050 (+)
G1304886 NA other upstream 1667538 51914597 ~ 51915010 (+)
G1304083 NA other upstream 1929548 51584754 ~ 51653000 (+)
LOC110490271 LOC106576088 other upstream 2184586 51386269 ~ 51404401 (+)
LOC110490339 LOC106576184 other downstream 1574654 55157706 ~ 55170847 (+)
G1308238 NA other downstream 1679606 55262958 ~ 55278451 (+)
G1308299 LOC106576208 other downstream 1764684 55348036 ~ 55349205 (+)
LOC110490357 LOC106609270 other downstream 1986666 55569924 ~ 55583925 (+)

Expression


Co-expression Network