G1307199


Basic Information

Item Value
gene id G1307199
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53627633 ~ 53672203 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1491288
TGCAGGTCTTGCCGTCTGGCTGCAGGGTGAATCCCACGGGGCAGCTGCAGCGGACCCCTGTAGCCGTGTCCTTGCACGTCCGGTCACAGCCGCCATTGTTCACCGCACAGGTTTCTGggtaaaacaaaaatatacagtgggaGAAAAGAGAGGCGGGGCGGGGGCAGGGGAGGGGTATTAACATACTGACAGGCACGCATATCTAAAGAGCAGAACGGAGTCTAAAGAGAGAAACAGTAGACAGTGAAAATACGACGGGTGGGTTGAGAAGAGGCTACATACAATGGGGAAACACACAACAGGGTGACGTCGTGTACTCAGGGCATTTGGCTATTCCATCATACCCATTCAGACTTCATTTCCACAATACTAAGCCCGTGTCAAGACATTGTGGTTGTCCATCAGACCAGTGACAGGTTATGAGACGGTACACAGTTGGAATTTCATACACGGTTCATAAACATGTCACAGACCGACTATAAAGTCATACTCAGGACTCACAGATTTCTACAAAACATAAACAAGAGATTAATGGGCAACATGAGTTGATAAAGGAGAGGAACTCAGTAGCCGAGTTAAGACAGGAAAGCCCTGTTTCCAAAAAACGTCAAGAAAACATTTAGTCAAAAACGATACTGAAGGTTAAGTAGAGAAAACACGAGAGTCTAAAATATAGTTAGTGGCGGGATCGAGTAGTAGTACCTAGGACCGAATGTGTATATTTTGACTCCAGGAAAAATGTTCTTGTATGTGGCCAAGATAAGGTTTGCTCTGACTTGTGAATATTGCCTGAGCTAATCCCAAAACAAATAGCACCTAATGGCATCTCCACTTTACCTGCGCAGCCCAATGTTGCTATAGGAAAGCTGAGCTCACTAATCCCCAATGGGTGTCAGATACTGCTGAGGACGGTGAAACAGTATACTGTTATTTAAACGGGGCTCAATAATAGGCTACTATATTTAATAAAGAACAGTTTCAGATTCAAACTACTTGGGTCTGGCAGGCTTCTGATATGTCCTGGAAAAAACTCAGTTGACTGTGCTTAGCTAAAGGGATAGTTCATCTACTTCCCcaaactcgtggataccatttctaTGTCTCTGCGTCCTGTATGAAGGAAGTTCAGAGGTAGTTTCGAGAGCAAAGCTAACTAGCTCAGCACAGACTGGAAGTCTTTGGGTACAGCTAGTgataatgctagttagcattggctcgcaaaactacctataatttccttcatactggacacagaagcaaaaaaatggtatccatgagttcagccaaaatcccaaactatccctttaaaggaAGACGCTGAAATGGCTCTGGCTATTTGGACATGGACTTGTCTCTCTGGCATCTATTCCCAGCTCAATAAATGCAAAGAGGTTCTGTGCCTGCTttaagggaggagggaagaggataAACCCTTTCAGACTGGCTAGCTAACATGCCCGGCTCTAGAGGTCACAGCATTAGCATAATACTGTCAATGAGTGTAGTGTCACGGACTGACGGCATCTCATCAGCGGGCTGATCCAACATGGCCGTCTGTTTGCAGCAAAACCAAACGGCAGGTGGGTGCTGTGAGAGCCAGCATGGTCGCCAGATTCTACCACCACAGGGAAGCTGTCAGTGGCAAAATGGCTCTACTTCAATGAGGCTGCTGGTGTGTTTCATAGAACTGCAGATAACCTTTTGGGATACTGAACCTAATTCCCCGAAAAGGAAAACACAGAGGGAATAGGGGAAGGAGAGATACTCTATCTTCctggtacactacatgaccaccTGGTCGTTGAAcatatcattccaaaatcatggtcaataatatggagttggtcccccctttgctgctataatagcctccactcttctgggaaggctttgcactagatgttggaacattgctgcgggaacttgcttccactcagccacaagaacattagtgaggttgggcactgatgttgggtgattaggcctggctcacagtcggcgttctaaTTCATCTCAAAGATGTTcgatttctgtatggacttaattttgtgcatgggggcattgccatgctgaaacaggaaagggccttcccaaaactgttgccacaaagttggaagcacagaatcgtctagaatgtcattgtatactgttgcgttaagatttcccttcactggaactaaggggcctagcctgaaaaacagccccagtccattattcctcctccaccaaactctaCAGTTGGCACAttgtggcaggtagcgttcttctaGCATCCACCAAACACAGATTTCTCAGTCGGAgttggtgaagtgtgattcatcaatccagagaaaactttacaccactccagccgacgcttggcgttgcgtatggtgatcttaggcttgtggccagatgctcggccatggaaacccatttcatgaagctcctgataaacagttcttgtgctgacgttacttccAGAAGCAGtctggaactcggtagtgagtgttgcaaccaaggacagacaaatTGTACACGCTACTCaacggtcctgttctgtgagcttgtgtggcctaccacttcacagctgagccattgttgcttctagacgtttccacttcacaataaaagcacttacagttgaccggggcagctctagtagggcagaaatgtgacgaactgacttgatggaaaggtgTCATTCTAAAACGGTGCcacagtaaggccattctactgccaatgtttgtctatggagattgcatggctgtgtgcttgattatatacacctgtcagcaatgggtgaggttgaaatagctgaatccactaagttgaaggggtgtccacatacttttgtatatatagtgtagcttgTCTGATGGGTGCTGTAGAGTATGGCAGTGGACCCCTGCAAACATCCCActcaggtgtgtgtgtgtgtgtgtgcatgtgtgtgtatatgaatgtgtgcatgtatgtgcgtgtgtgtttatgcctgtgtgtgtgtgtgtgtatatgggcgACTGGGCAATTATGTGCTGTTGTATGGGTGTGAGTgcttgtgagtgtgtgcatgcttgAGTGTGAGGGTGCGTGCACGTGTGTATGAgcgtgtgaaagtgtgtgtgtgtgtgtgtgtgtgtgtgagtgggtgggtggttgtgtaagaaagggtgaggaggaggagaagagaggactcCAAGACTCTCCTAAGGGGCTAAGGAATCCGCAGTTATAAGGTCCATTTAGAGGAGGCCTTCTGAGGGGGGATGTTTAGAGAGAGagcagaacttacacaggaaatAATCactgaagagagggaggaatgaaTCCACAGCAGTACACTACAGCTAAGAGGGGAACAGTAACGGTAACCAGTAACGATGCACTGTAAGAAAACAGGGGGACAAGTGTTGGTTGCTATTAATGTTACCGCAATTCAAGGAGGAGGGAAAAATGAAAGAAAAATACAAATCTGAATAAAAACAAAACGGAAATCAAAGGGAAAATGCAGAACAGTAGGATCTCCCATGCAGCcggacagacagaaacacagacaggcaGAAGGGTTGCATAGATTAGTGACAGAGGTATGGTGAGGACAGACGGACGCACAGACGGACGGCCTGACAGACACGGAGAGCGTGTCAGATTGAGAATGCATGCGGCTGGCTGGGATGACGGCATGACGGAGGTGTTATTGAGAAACAGGCAGGGTTACGTCTCTACAGGTGGATGAGGGAGGAGGTGCTGATGGGTGGGGGGTGACGTGGGTTTTGGGGGTTGCCACAGTAACAGGATTTTGTTTGCTGGTTGAGGccgttgtactgttagagggagGGGGGCATATTTCAGGTTGGAGGAGGGGGGGTTGTTTGGAgtgatgtttgtttttgttttgggtGGGTAGCTCTATGTAACGTTAGATCAGGCTGCAACTGAGATGTTCACTCTAATCCTGTATCATTGTTTTATTAGTTCCCCCCAGTCTTTAATTCAATTCCCTTTAATAATCTTAATTCCTTTAAGGTAAGGATTTAATCCTTTTTGAATTGAATTTGAACATGGATGCTCAGACAAGACAGgcaatcagtaactatcaccagAAAGCAGgaggaggtaggtagggaggaagaggaggaggaggaagaggaggatcacCAGAGACAGCACTACACAAAGGTGGGTCAAAGGTGGGCCCAGTGACAGAGCAGTTGGGACACTCAGACCAGGAGCCTTTCCTCTCGCCAGAGAGAAAAAGACacgggacagagggagaaggagaacagAGTTTTTCATTCTTTCAGAGGTCTTCCTCTTCTTTCGTGGATTTCGTTGTTCCTCGCATGGCTGGAAAGGAAAAGGTTATGGGCACAAAATGAAGGCAGTTCTGTGAGAACACAGCACTGATGATACTGTATAGTAGAGATCTGtttgtggggagagagagagggcttctCCAGTGTTCTAGTACAGCAGGAATGACAACACACAGAAGAAGGGGTTTATTTGTGACATGACAGAagacctgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaattccAGTTAGAACAGGCattgcagggatcatcaactaaatTCTGCCGCAGCCAATTTTTTTCTTGAATGGATGTTCGTGatgccggaacataattacaaataatttgtagaccgcaaaatgaccgcaagaagcccaaacagatataatatttgactaaaacaatcatttcaaacattgcttaatacttgggaacagatttgcTAAATTTAAATGTTACAgtattatgtccaacaatgaaaaaaattaaataataataataatatatttttttatttgctcTGAAAACTTTtagggccaaataaaaccaccagtGGGACAAATTTGGCATGCGGGCCTCCAATTGGGGAAACCTGAGGTATTGTGTTCAAATGCATCTGATCTTAGTCAACTCCAGAAATGGTTTAACTCCTTCTGGGGGCATCTGTACAGACTTTGACTAACTGGCATAATGTAACACAAGAAAAAGAGTTTGTGTATCTGCCAATCTGCTTTAGCTTGCCACGGATTTTGCAACTCGGTGGGATAAACCTTGTTTAGGAGCTATGGAGAAACAAGGGAGTCTGTAAATCACTGTCTCGttacggacagacagacacagccagGCTCCCTTCGGAACACTCCGGGAACGTTCAGGAACGTCTCTGTGCACCCAAAAAACACTGGAGCATTTTTTTCAAAGGCAGAAAAAATCAGATTTGGTACGCCCAAGCTTCCAAACTTCCGAGCCAAATGTGGGACTGGAGTCCGTTGGAAGGAAGGCAAAgaaaaaaattatgaaaaacTATTTTACTTACCTGGAACCTCTCATTTATCTCAGGCAAATTCCCCCAGAAAAAAAATCATGAACATTTCCTCTCTGTTCGGCTTCAGAGCCACCATAGCCACGGGATACGGCCACATTGACAGCCGGGCGTAAAAGTTAGCCATTTGGCAAACAGTGGCATGCAGGCCTGGCGTCTTTCAGGCCTAGCGATGGGCATGAGTTACACTGACTTGGCTAGTTTTCCAGGGTAATGAAGATGATGAATGTGTTTTTCAACTTCTGAGACTTCTCAACTATTCATTTTCCAGTTTCCACCACAGCCCTACCTAGGGATCAAACCCCCAAACCCCCTCTATTCCTCCTTTCACTCCCTGACAAGTtaacacactactactacactgacTACTCTGTCGGCAGTCAAAGTGCGTGTTTGTCTGGGAGTGTGCATACAGGTACAGGTGTAATTGTGTGattgaaagagaaagacagagacagagagagagagagagacagagagagagacagagagagacagagagagacagagagagagag
>TU1491289
ggaggaaggggtaACTAAAGCCCCCCCTGGTCACCCCTGGCTTGGCCCGTTACTGGTCTTTCTCAGGCGGTTAGTTTGGGAAGGATTGGTGGACAAAGTGAAGGACTCTCTGAAGCAGTGTTCACAAATGAATGGAGGCTTTCTGACTCTCAACTAacggttaggtgtgtgtgtgtgcatgtgtgtgtatatgaatgtgtgcatgtatgtgcgtgtgtgtttatgcctgtgtgtgtgtgtgtgtatatgggcgACTGGGCAATTATGTGCTGTTGTATGGGTGTGAGTgcttgtgagtgtgtgcatgcttgAGTGTGAGGGTGCGTGCACGTGTGTATGAgcgtgtgaaagtgtgtgtgtgtgtgtgtgtgtgtgtgagtgggtgggtggttgtgtaagaaagggtgaggaggaggagaagagaggactcCAAGACTCTCCTAAGGGGCTAAGGAATCCGCAGTTATAAGGTCCATTTAGAGGAGGCCTTCTGAGGGGGGATGTTTAGAGAGAGagcagaacttacacaggaaatAATCactgaagagagggaggaatgaaTCCACAGCAGTACACTACAGCTAAGAGGGGAACAGTAACGGTAACCAGTAACGATGCACTGTAAGAAAACAGGGGGACAAGTGTTGGTTGCTATTAATGTTACCGCAATTCAAGGAGGAGGGAAAAATGAAAGAAAAATACAAATCTGAATAAAAACAAAACGGAAATCAAAGGGAAAATGCAGAACAGTAGGATCTCCCATGCAGCcggacagacagaaacacagacaggcaGAAGGGTTGCATAGATTAGTGACAGAGGTATGGTGAGGACAGACGGACGCACAGACGGACGGCCTGACAGACACGGAGAGCGTGTCAGATTGAGAATGCATGCGGCTGGCTGGGATGACGGCATGACGGAGGTGTTATTGAGAAACAGGCAGGGTTACGTCTCTACAGGTGGATGAGGGAGGAGGTGCTGATGGGTGGGGGGTGACGTGGGTTTTGGGGGTTGCCACAGTAACAGGATTTTGTTTGCTGGTTGAGGccgttgtactgttagagggagGGGGGCATATTTCAGGTTGGAGGAGGGGGGGTTGTTTGGAgtgatgtttgtttttgttttgggtGGGTAGCTCTATGTAACGTTAGATCAGGCTGCAACTGAGATGTTCACTCTAATCCTGTATCATTGTTTTATTAGTTCCCCCCAGTCTTTAATTCAATTCCCTTTAATAATCTTAATTCCTTTAAGGTAAGGATTTAATCCTTTTTGAATTGAATTTGAACATGGATGCTCAGACAAGACAGgcaatcagtaactatcaccagAAAGCAGgaggaggtaggtagggaggaagaggaggaggaggaagaggaggatcacCAGAGACAGCACTACACAAAGGTGGGTCAAAGGTGGGCCCAGTGACAGAGCAGTTGGGACACTCAGACCAGGAGCCTTTCCTCTCGCCAGAGAGAAAAAGACacgggacagagggagaaggagaacagAGTTTTTCATTCTTTCAGAGGTCTTCCTCTTCTTTCGTGGATTTCGTTGTTCCTCGCATGGCTGGAAAGGAAAAGGTTATGGGCACAAAATGAAGGCAGTTCTGTGAGAACACAGCACTGATGATACTGTATAGTAGAGATCTGtttgtggggagagagagagggcttctCCAGTGTTCTAGTACAGCAGGAATGACAACACACAGAAGAAGGGGTTTATTTGTGACATGACAGAagacctgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaattccAGTTAGAACAGGCattgcagggatcatcaactaaatTCTGCCGCAGCCAATTTTTTTCTTGAATGGATGTTCGTGatgccggaacataattacaaataatttgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtgtgtgtgctaCAGCTCCGCTACAGCCGACACTCCGCTGTCGAGCATTCCTCTTCACACCGCAAATGAAATACTAACGTTCCGACTCATAACAAACCCTCTTCCTCTTCG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1491288 False 5871 lncRNA 0.46 4 53627633 53672203
TU1491289 True 2054 lncRNA 0.47 2 53657161 53664288

Neighbor

gene id symbol gene type direction distance location
LOC110490308 LOC106576153 coding downstream 43294 53578839 ~ 53584339 (-)
aldh1l2 LOC106576152 coding downstream 51467 53555038 ~ 53576166 (-)
etnk1 LOC106609326 coding downstream 79402 53528016 ~ 53548231 (-)
lrmp LOC106576138 coding downstream 518423 53085647 ~ 53109210 (-)
LOC110490299 LOC106576137 coding downstream 564832 53060950 ~ 53062801 (-)
efcab6 efcab6 coding upstream 84276 53756479 ~ 53786697 (-)
sult4a1 LOC106576158 coding upstream 116475 53788678 ~ 53817042 (-)
LOC110490327 LOC106609305 coding upstream 619954 54292157 ~ 54302557 (-)
LOC110490750 LOC106576170 coding upstream 632805 54305008 ~ 54371525 (-)
LOC110490329 LOC106609303 coding upstream 702422 54374625 ~ 54380846 (-)
G1306631 NA non-coding downstream 184638 53442454 ~ 53442995 (-)
G1306564 NA non-coding downstream 357497 53269687 ~ 53270136 (-)
G1306554 NA non-coding downstream 371911 53255498 ~ 53255722 (-)
G1306552 NA non-coding downstream 378933 53248191 ~ 53248700 (-)
G1307250 NA non-coding upstream 73068 53745271 ~ 53842233 (-)
G1307315 NA non-coding upstream 184087 53856290 ~ 53891901 (-)
G1307316 NA non-coding upstream 220100 53892303 ~ 53892980 (-)
G1307335 NA non-coding upstream 222221 53894424 ~ 53894708 (-)
G1307337 NA non-coding upstream 224020 53896223 ~ 53896429 (-)
G1306232 LOC106576137 other downstream 565353 53054849 ~ 53062280 (-)
LOC110490288 LOC106609184 other downstream 818020 52630838 ~ 52809711 (-)
G1304988 NA other downstream 1637460 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 1705105 51921495 ~ 51922528 (-)
LOC110490744 LOC106576129 other downstream 1834279 51785488 ~ 51793354 (-)
G1307309 NA other upstream 227107 53899310 ~ 53922128 (-)
G1307473 NA other upstream 477841 54150044 ~ 54150540 (-)
G1307901 NA other upstream 1094769 54766972 ~ 54768422 (-)
LOC110490337 LOC106609287 other upstream 1476572 55148760 ~ 55155353 (-)

Expression


Co-expression Network