G1307250


Basic Information

Item Value
gene id G1307250
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53745271 ~ 53842233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1491352
TTTAATTCAATTTGTGTAGATAATCTCTCAGAAAACCAGGTAGTTTTAAGAAAGGTATTTTACATTTACAGAGTTGTCTCCAGGGGCAACACATTATACAATACCATTCTAAAATGGTTGGATTTTTCTTCTTTTCACATGAAAAAATATTGTACATCATTAAAGCAATAAAAAATCCCAATAGTTAGTATATCCCAAACAATGGTAACAACGATATACAATACAAGCAGATTGTCATCAGAAGTTATTGGATTCAGAACAGCATGCCCCAAGGAACGAACAAGAAATACAACAGCAAAACTTGAGTTTTCAAAGAAAACAGGAAATACAGAATACAGCTATCGAGGAACAGTGCATAAAAAGTGAGACATTTCAAAGTTATGGTTGAAAGAGAATAGtaagaaatgccccaaaacaaaCAGACATTTCCCCCTACAGAAACCTTTAAAAGAAAAGAAGATGATACAGACAATGACTCCCCCCCTCGTTTAAGCATGTTCTCAGAATGCTTACCCCCTGGCCCTATCCACACGCACACAGGtatacgcacacatacacacacacatacagtattcaCACACACTTATCTGTAAACATTCTATCCTAGTCTTTGTATTCCTACAACAGCCCACTAGTCTGCCCCATTAAAACATAACCCAGCTAGCACAATGTGCAGAACAGCAGTGAAACACCAGTGACCCTGGGAATAAAACGTAGCCAGAGGGGATGTTCATATATAATGTCTGAGAGCAGAGAGATCAAACAGGGATGTAGTCTTGTTATGCTAACCACACTTTGAGCTCAGCTAGCCAACCAAAGACTTTGGCTGCCAGACGAGCAGAGGAAGGACGCTCATTCACAAGTGCTTCAGAAAGATAAAAAATTAACCCTTTTTACGCAGACAACTGCTTGACAACATGAAAGAGTTAATAATAGCTACACGGGTTGTGGGTAACCCCGTGCACtcaaaaaaattatatttaattTAGAGCTGTTTAAGTAGTGGCCAGAACACATGTTGGGTTACTTTGACAAAGCCAGTTGGGTTGCATGAATGACCCAACATGTTGGGTTGTTGGGATTACCCAAACATTGGTTAATGTAACCATCAGTTGGGTATTTTTTACTCTCATGCTGGGTTGACCTAGCATCTGGGTCTTTTTTAATGTAACCCTTAGGTTATTTTCAGGAGGCGTGGTTTATTAGGGGCGTGGTTTTCAGCTAGCTCTTATTGGCcacccgtgagagtaaatgtcattcctgtacATCATTTTAAATGTACATACTGCAAATTTAAATGTCAATAACATGCTTTTCACACATTCTTTTGTAATGTTAAGATGATTTATTATAAGGTATACCATCTTACTGCCTAATAAGGTATACCACCTTATTGTATCCCAACAATGGGATTTACGTAGGTTTTAGGGAACTTATACACTTCTGTAAGTGTCGTTGAAGCTACAAAATGTTAAATGTTTGACCTTAATATGTCATAACTATGCAACAGAACAGATGAATACGAATGACATTTACTCACATGGGTGGttaaaaataactatctgaaagccacgccCCTACTAAACTACACCTCCAGTCTTCTGACCTGACCTGCTGGGTCAtatctcaataacccagcatcaataactcTGCAGTTTTTAAAGAAAACAACTCAGCAGTTgagtcaaccaaacaacccagcattttTTAGAGTGTAACATAGTGCAGATATTTTTTTACAGTAATAAGCATTTATTAGCCTATATAAGAAAGAACTGAACTTAGAATAAAATGTAAACATTGTTTGCACTGGCTCTTTTTTTaacaacacacacatatttaaCAACATTTGAAGTAATCCTTGATTGCTAACATGTTTTTACAATGACAGGTGATGTAGATTTACAGTTCCAACTTCTTGATCAGTTACGGTACATTAGGCCTACACCTCATAGTCATCCACTAAGAGTTCAACGTTCATTCCCATGATACATCTCTCCCAGAAAGGGCACCATGGAGCAGTGAGAACATTCCAGACACCGCTGCTTCTGTACAGGGTCGGGAGCAAACACATTTGCCAATCTGCTCTGTTGGTTATTACGTATTTCCAGTATTCCGCACTCGGAATCAAAATCTTGCAGGCTTCCCGGCCGGTGACCTCGGAAATAAACTTGTCAGGATCACGGCACATGAGCCAGAGATGAGAGGATGAGCTGATTACACATGCAACGAAGGATAGAGGGGgaagaaggacagagggggaaaaACAGAAGAGGCTTACTGAGAGTTGTAATGAGACCCAGGGGAGTGGTGTCAACACGTTTGACACCTATACTCACACACAGCCCTCACACACACtttgatctcacacacacacacaaaccaccatGCCCAAggcctgagagaaagagagagagagagagatagagagagagagagagagagagagagagggtggagagtgaAACTAGAGGTGCAGAGAAAAAGAGGGATCAAGAGAAAAAGGGATGAGGGGAAAGCAGTGTTTTAATCTGCAGTGCAGGAAGTGTGGTATCAGAGTACTGTCAGGGGTATCCTTTCTGTGCTGGCAAACAGCTCCACAAAGTCAAAAATGGGCATTGGGTTAATGTTCTGATACCCTACTGGTAAGTGTTCAATCACTCCTCAGGGAAGGTCTCAAATGAAGGGTGGACCACAATGTCACAATGTCAAAACGTCACCACTGAGCAACTTCCACTGGTGACTTAACAGAGTCCTCTATGAGGAAcaagagagaatgagagttatCCAGTGTCTTCTTCTGAGAGAAAGACTGTGAGTTCAAACAGTGACACAGGAGACACTGTTACCCCTGTCCTCTTCTCTATCTGACAGCCAGGTCAGATTGTCAGTGCAGTAGAAGTGCAACAGAAGATTTACAGATTAATGCTGACATGTTCATATGAGGCATCTGGGGTCTGTCTTTTGCCTTACTTTAGAGTTTGCAGGAGCTTTTGTTGAAATAAAGGAATGACAGTACATACAATAACATGAATGGATTTGCTAAGTGAGGATTTGCAATGGCGCCTGTCTATTTAGACACACACATCGTCCATCActtgggcatgtgtgtgtgttgtgccacacacacacacacacacacacacacaacacacacacacag
>TU1491348
TTTAATTCAATTTGTGTAGATAATCTCTCAGAAAACCAGGTAGTTTTAAGAAAGGTATTTTACATTTACAGAGTTGTCTCCAGGGGCAACACATTATACAATACCATTCTAAAATGGTTGGATTTTTCTTCTTTTCACATGAAAAAATATTGTACATCATTAAAGCAATAAAAAATCCCAATAGTTAGTATATCCCAAACAATGGTAACAACGATATACAATACAAGCAGATTGTCATCAGAAGTTATTGGATTCAGAACAGCATGCCCCAAGGAACGAACAAGAAATACAACAGCAAAACTTGAGTTTTCAAAGAAAACAGGAAATACAGAATACAGCTATCGAGGAACAGTGCATAAAAAGTGAGACATTTCAAAGTTATGGTTGAAAGAGAATAGtaagaaatgccccaaaacaaaCAGACATTTCCCCCTACAGAAACCTTTAAAAGAAAAGAAGATGATACAGACAATGACTCCCCCCCTCGTTTAAGCATGTTCTCAGAATGCTTACCCCCTGGCCCTATCCACACGCACACAGGtatacgcacacatacacacacacatacagtattcaCACACACTTATCTGTAAACATTCTATCCTAGTCTTTGTATTCCTACAACAGCCCACTAGTCTGCCCCATTAAAACATAACCCAGCTAGCACAATGTGCAGAACAGCAGTGAAACACCAGTGACCCTGGGAATAAAACGTAGCCAGAGGGGATGTTCATATATAATGTCTGAGAGCAGAGAGATCAAACAGGGATGTAGTCTTGTTATGCTAACCACACTTTGAGCTCAGCTAGCCAACCAAAGACTTTGGCTGCCAGACGAGCAGAGGAAGGACGCTCATTCACAAGTGCTTCAGAAAGATAAAAAATTAACCCTTTTTACGCAGACAACTGCTTGACAACATGAAAGAGTTAATAATAGCTACACGGGTTGTGGGTAACCCCGTGCACtcaaaaaaattatatttaattTAGAGCTGTTTAAGTAGTGGCCAGAACACATGTTGGGTTACTTTGACAAAGCCAGTTGGGTTGCATGAATGACCCAACATGTTGGGTTGTTGGGATTACCCAAACATTGGTTAATGTAACCATCAGTTGGGTATTTTTTACTCTCATGCTGGGTTGACCTAGCATCTGGGTCTTTTTTAATGTAACCCTTAGGTTATTTTCAGGAGGCGTGGTTTATTAGGGGCGTGGTTTTCAGCTAGCTCTTATTGGCcacccgtgagagtaaatgtcattcctgtacATCATTTTAAATGTACATACTGCAAATTTAAATGTCAATAACATGCTTTTCACACATTCTTTTGTAATGTTAAGATGATTTATTATAAGGTATACCATCTTACTGCCTAATAAGGTATACCACCTTATTGTATCCCAACAATGGGATTTACGTAGGTTTTAGGGAACTTATACACTTCTGTAAGTGTCGTTGAAGCTACAAAATGTTAAATGTTTGACCTTAATATGTCATAACTATGCAACAGAACAGATGAATACGAATGACATTTACTCACATGGGTGGttaaaaataactatctgaaagccacgccCCTACTAAACTACACCTCCAGTCTTCTGACCTGACCTGCTGGGTCAtatctcaataacccagcatcaataactcTGCAGTTTTTAAAGAAAACAACTCAGCAGTTgagtcaaccaaacaacccagcattttTTAGAGTGTAACATAGTGCAGATATTTTTTTACAGTAATAAGCATTTATTAGCCTATATAAGAAAGAACTGAACTTAGAATAAAATGTAAACATTGTTTGCACTGGCTCTTTTTTTaacaacacacacatatttaaCAACATTTGAAGTAATCCTTGATTGCTAACATGTTTTTACAATGACAGGTGATGTAGATTTACAGTTCCAACTTCTTGATCAGTTACGGTACATTAGGCCTACACCTCATAGTCATCCACTAAGAGTTCAACGTTCATTCCCATGATACATCTCTCCCAGAAAGGGCACCATGGAGCAGTGAGAACATTCCAGACACCGCTGCTTCTGTACAGGGTCGGGAGCAAACACATTTGCCAATCTGCTCTGTTGGTTATTACGTATTTCCAGTATTCCGCACTCGGAATCAAAATCTTGCAGGCTTCCCGGCCGGTGACCTCGGAAATAAACTTGTCAGGATCACGGCACATGAGCCAGAGATGAGAGGATGAGCTGATTACACATGCAACGAAGGATAGAGGGGgaagaaggacagagggggaaaaACAGAAGAGGCTTACTGAGAGTTGTAATGAGACCCAGGGGAGTGGTGTCAACACGTTTGACACCTATACTCACACACAGCCCGTGGCAGAGACCTCCCGCTGCCCTCACACACACtttgatctcacacacacacacaaaccaccatGCCCAAggcctgagagaaagagagagagagagagagagagagagagagagagagagagaaggggagatgagAAAGAATTAAGGGGCTAttgagagagacatggagatggAATGAGatagagatgaagggaatgagagagaagagtgagttTGTACATTATGTAAATACTTGCATTTCTTCTTTTTGTTCCCACTTCCAACTCATCTCAAGTTAAAAGTCTGGGATTTTCTACCACTAGGGCCAAAATCACATGCTATACAGTatctagcatgctagcagatacccatactgccctaccaagcaaaaaggcagtatcTGCTCATATCATGGAACTGAGAAAATGGTGGTTTCACAGTAACTTATTGCAGTTACTACTAATatgacccccattttctccaaaacacaatacaaccaATGCAGtatacttgtccacatgattaagcatgtatttaat
>TU1491350
TCTCCCCTGGGTAAGAGGCTTACTGAGAGTTGTAATGAGACCCAGGGGAGTGGTGTCAACACGTTTGACACCTATACTCACACACAGCCCGTGGCAGAGACCTCCCGCTGCCCTCACACACACtttgatctcacacacacacacaaaccaccatGCCCAAggcctgagagaaagagagagagagagagatagagagagagagagagagagagagagagggtggagagtgaAACTAGAGGTGCAGAGAAAAAGAGGGATCAAGAGAAAAAGGGATGAGGGGAAAGCAGTGTTTTAATCTGCAGTGCAGGAAGTGTGGTATCAGAGTACTGTCAGGGGTATCCTTTCTGTGCTGGCAAACAGCTCCACAAAGTCAAAAATGGGCATTGGGTTAATGTTCTGATACCCTACTGGTAAGTGTTCAATCACTCCTCAGGGAAGGTCTCAAATGAAGGGTGGACCACAATGTCACAATGTCAAAACGTCACCACTGAGCAACTTCCACTGGTGACTTAACAGAGTCCTCTATGAGGAAcaagagagaatgagagttatCCAGTGTCTTCTTCTGAGAGAAAGACTGTGAGTTCAAACAGTGACACAGGAGACACTGTTACCCCTGTCCTCTTCTCTATCTGACAGCCAGGTCAGATTGTCAGTGCAGTAGAAGTGCAACAGAAGATTTACAGATTAATGCTGACATGTTCATATGAGGCATCTGGGGTCTGTCTTTTGCCTTACTTTAGAGTTTGCAGGAGCTTTTGTTGAAATAAAGGAATGACAGTACATACAATAACATGAATGGATTTGCTAAGTGAGGATTTGCAATGGCGCCTGTCTATTTAGACACACACATCGTCCATCActtgggcatgtgtgtgtgttgtgccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcagcatcCATTAGAGCcttgaatatatacagtacaccaccACACCTGGCCTTCACCCTCACCTACCTGCCTTCCCACCACTAGGCTCCTGATTGGAGGGGGGCTCAGCAGGGCGGGGCTTCTCTAGTCATGTGGTCCTGGTGGGATTGGGCAGGTCGAAGACGATGGGCGGGTTCATGGGCTGGAAGTTGACGGTGCAGGCCGAGGCGTTGACGAACGTGGTGGTGCCGTCTGTCATCAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1491352 False 3163 lncRNA 0.41 3 53745271 53755835
TU1491348 False 2866 lncRNA 0.40 2 53748344 53755835
TU1491350 True 1230 lncRNA 0.49 2 53752348 53842233

Neighbor

gene id symbol gene type direction distance location
LOC110490308 LOC106576153 coding downstream 160932 53578839 ~ 53584339 (-)
aldh1l2 LOC106576152 coding downstream 169105 53555038 ~ 53576166 (-)
etnk1 LOC106609326 coding downstream 197040 53528016 ~ 53548231 (-)
lrmp LOC106576138 coding downstream 636061 53085647 ~ 53109210 (-)
LOC110490299 LOC106576137 coding downstream 682470 53060950 ~ 53062801 (-)
LOC110490327 LOC106609305 coding upstream 449924 54292157 ~ 54302557 (-)
LOC110490750 LOC106576170 coding upstream 462775 54305008 ~ 54371525 (-)
LOC110490329 LOC106609303 coding upstream 532392 54374625 ~ 54380846 (-)
LOC110490332 LOC106609300 coding upstream 569070 54411303 ~ 54419096 (-)
LOC110490331 LOC106576204 coding upstream 755393 54597626 ~ 54599878 (-)
G1307199 NA non-coding downstream 73068 53627633 ~ 53672203 (-)
G1307204 NA non-coding downstream 100491 53643904 ~ 53644780 (-)
G1306631 NA non-coding downstream 302276 53442454 ~ 53442995 (-)
G1306564 NA non-coding downstream 475135 53269687 ~ 53270136 (-)
G1307315 NA non-coding upstream 14057 53856290 ~ 53891901 (-)
G1307316 NA non-coding upstream 50070 53892303 ~ 53892980 (-)
G1307335 NA non-coding upstream 52191 53894424 ~ 53894708 (-)
G1307337 NA non-coding upstream 53990 53896223 ~ 53896429 (-)
G1307311 NA non-coding upstream 54451 53896684 ~ 53897042 (-)
G1306232 LOC106576137 other downstream 682991 53054849 ~ 53062280 (-)
LOC110490288 LOC106609184 other downstream 935658 52630838 ~ 52809711 (-)
G1304988 NA other downstream 1755098 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 1822743 51921495 ~ 51922528 (-)
LOC110490744 LOC106576129 other downstream 1951917 51785488 ~ 51793354 (-)
G1307309 NA other upstream 57077 53899310 ~ 53922128 (-)
G1307473 NA other upstream 307811 54150044 ~ 54150540 (-)
G1307901 NA other upstream 924739 54766972 ~ 54768422 (-)
LOC110490337 LOC106609287 other upstream 1306542 55148760 ~ 55155353 (-)
LOC110490757 LOC106576193 other upstream 1576090 55417169 ~ 55438953 (-)

Expression


Co-expression Network