G1307315


Basic Information

Item Value
gene id G1307315
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53856290 ~ 53891901 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1491420
TAGTTGATTTTGCAGATGCATCATGGTTTTGTAACTCAGTTttctacatacattttaaaactgGTTTCATGAAAATGACCCATTTGAGATGCCATATAAAAATTGTGAATCCTATGCAACTCAAGTTATTGTGCAAAAGCAACGGTCAACATTACGAGAAGTTCTGAAAGGAACTTTCAAGAACATTGTGATTCAAATTTCTTGACATCACAGCTCATCACAGTAGTTCATAGTTCAGTTCAAGGGTCCTGTCTAATAGTAGTCAGGAAAACGCACAGCTCTTAGTCAAGGAAGTCAACGTCAACTCAGGTCAACAGTCCATTAGGAAGGAGGCATGAATGCTACATTTGACTGAACACAGGTAGTTAGGTACTGTAGGCATGTAGGTACTGTAGGTAAGTAGGTAGTGATAACACGTTATCTGGTAAAACTAGACAGTGATTTATAAAATGTGCATATCCAAACAATAATTCACTGGCAGAGGTGGTGAGCTGGTTAAATGTTTTACAatgtgtactgtagaataaaaaatgattggtggagtgatcaAAAGACATGATTGAGTCAATAGTGTGTCTAACAGTTCTGGATCCCAAAGCTATTCGATCACATGACCATTTTTTGCCTATCCGAATCCACCTTTCAGTTCCTATACACTATAGACAGGCCCAGTGGGAGGGAACTTTAGCTGGTACATGTggcttccatatgtttgatatgttccatttATTCCTTTTCAGACATTACAAAAatgcccatcctcctatagctcctcccaccagtctccTTTGTCGCTCAAATAGGTTAATAACTGATTGATAGTGCTAGCTTGTGGTTTGCTGCAACCtacagtatcagaccactacttATGACACAACTTTGATTACAATATAGCTACAGTATGTCAAGGGGCAAGGCTCTAGACTGAAACCATTTAATGGCGTTTTGCAACCCTTTGACTTGGCTGTGCGAGTTAAATTTGTATTGGGTGCCGTGCGAGCTGAACATTCATGACATGTTCACCTCActcaaaagttttaaaaaataatttttaaaaaagtcCCATTTTTTTGGTCAAACAGTAAAGTGcattatcctcatgattcctgcaATGAAAGTGTCTGCCCAATCCCTTGGCTTGTTCCGTTGGAGCCTGCTGCTGTGATGAGCAAGCCACAGTGTGCACtccgggagagagaaaaaaggcttCTTGATTGTATAGCATTTCAATATAACATTTCAAAATCCAATTGCAGGAAATACATAGCTTTACAAGCAACTAATGTGCTCAGCTTTCTGTGGGTATACTTTATATTTGTCATTTCCATAATTTTCAGCTCAACTgagctcctgagtggcacagcggtctaaggcactacatctcagtggatgaagcatcactacagacaccctggttcaaaccCAGGCTGTATCACGACTAGCAGTGATTGGAAGTCCTGGGCGTGTGGGAgctggggcggcgcacaattggtcatctgggtttggccggtgtaggccgtcattgtaaataagaatttgttcttaacggacttgccttgAATAAAATAAATAGCAACTATTTTATAATCAAAATATTAGATATGGCTTTAAGATACGAAGCCTGCGAAATGCGCTATTGCGAGTGCATAGGGTAGCAGGGCTACAACTGCAACAAAAAaaggacattacatttacttttagATGAATACATGGCTACTAGCAGTGGGTATTATATTTAGTATTAGTGATCTAGCTAATGTGTTTTGAGTTCTCACTTTTTCATGTGGTGTATAAGCCCCCAAATAAATCTGCCTATGATAAGCGTGCACACAACGATATAGGCAAATTCATCTCTATTGAACAAAAAATATCAGAAAATTCTAGAGCCCTATTTTAACAGTAAAATATACCAACTCACAATTCATGACCATTTTTGGATTAGGTTGCACATCAAAATACTGTATCTGGAATCATGCTTTCCTGCTTGGACGTTAGATAGAACAGCTTATTTCTTGAATAGCCGACCATCTCAGTAGTTATGGtccatcttgggttagttatacaaATCTTTGATTTGACTTTACTCCCATAAAAACTCTGGATGGAAATGTGGTTTGTGGCTAATGAGGCAATACAAATGTGATGTGACTAAAATATGACTCAAATTAAAGTGCGTTCAGTTGACTAAAATGGCTGTTTTTGTCATTTTAACAATGACTAAATCATTATTCAAATCATAAAAATGTGACTAAGATTTAATGATATTTTAGTCAAAATGCCAGACTAGAATGAATCTAAAAAAGAGTGCCAAAATGAACACTGAAGCAGATCTGTCGTGGGGAGGAGCTGGGCGTGTGGGGGCTGGGGATGTTCCAGTATTGGCTTTGGAAGTTGAGAACAGAACGAGCGAACCCGGAGAGATGACTGTTTCTCTCCCTGGGTCCGTCACTGTCCAGGGGTAGGGGCAGACTCATGCAATTCCTCAGGGAAC
>TU1491421
CCATATCTATCTTTATTTCGCAAACACAATTCAGTACAATCACAATATATATTTGTATCATTTTAAGCatattttaacacaggcttaatgcctaacaaacactttgtacttttaaaaacatttttaacatAGGCCAGACCCTGTTTAAGCCTAGGAAGAAAACACTTACATTTGCTCAACTTGCAATTGGCTTAACCAttgtctcaacttaccccatggtcattggctcaatttaccccaaggcaaacatcttcactatattagcccacacagatacaaggatgcactttcatgctaggtttaggatcTCATATTGAAGGTTATTGAGACCCCAACTGTTggggtttagatacaagcatcatgaaacctcgaACACAAATTAATTTGACGTggtaaacatttttttccatgtggtttcttccttcaaaCTCCATGCAATTATGgactcttcctaaatatttggtcaaattatggATTTTTGTGTATAAACAAAGCTCAATTTACCGCTTTGGTTCAACTTATCCCACTCTCCCCTACCTATTCTGCACAGTTTCCATAATGATGAGGCACCAAAATAGGATTTTAATACTTACAGTATATTTAAACACAAAAGGTCACATCATAAAAAccgttgttgtgttttatgttattaAGATAAGGTTCTTAATGTGAAATAACAACAGTAAAGTATATTTAAGAAATATaccactaaccactaggccatcTTCGGGACATCTTAACCACCTGGCATCTTAGGGACAAGTAGGTAGAGGTTTTCACAGTGTTACACACGTTATAAATACAAGTACAGTATGTACCCTACTATAAATGGGGCAGTGTGGGAACTTAAATTTGACATTTGATCATGCCATTAAAATTGTGAATCCTATGCACCTAAAGTTATTGTTCAAAAGCAATGGTCAACATTGAGAGATATTGTGATTCAAATTTCTTGACATCACAGTAGTTCATAGTTCTGTTCAAGGGTCCTGTCTAATAGTAGTCAGGAAAACACACAGCTCTTAGTCAAGGAAGTCAACGTCAACTCAGGTCAACAGTCCATTAGGAAGGAGGCATGAATGCTACATTTGACTGAACACAGGTAGTTAGGTACTGTAGGCATGTAGGTACTGTAGGTAAGTAGGTAGTGATAACACGTTATCTGGTAAAACTAGACAGTGATTTATAAAATGTGCATATCCAAACAATAATTCACTGGCAGAGGTGGTGAGCTGGTTAAATGTTTTACAatgtgtactgtagaataaaaaatgattggtggagtgatcaAAAGACATGATTGAGTCAATAGTGTGTCTAACAGTTCTGGATCCCAAAGCTATTCGATCACATGACCATTTTTTGCCTATCCGAATCCACCTTTCAGTTCCTATACACTATAGACAGGCCCAGTGGGAGGGAACTTTAGCTGGTACATGTggcttccatatgtttgatatgttccatttATTCCTTTTCAGACATTACAAAAatgcccatcctcctatagctcctcccaccagtctccTTTGTCGCTCAAATAGGTTAATAACTGATTGATAGTGCTAGCTTGTGGTTTGCTGCAACCtacagtatcagaccactacttATGACACAACTTTGATTACAATATAGCTACAGTATGTCAAGGGGCAAGGCTCTAGACTGAAACCATTTAATGGCGTTTTGCAACCCTTTGACTTGGCTGTGCGAGTTAAATTTGTATTGGGTGCCGTGCGAGCTGAACATTCATGACATGTTCACCTCActcaaaagttttaaaaaataatttttaaaaaagtcCCATTTTTTTGGTCAAACAGTAAAGTGcattatcctcatgattcctgcaATGAAAGTGTCTGCCCAATCCCTTGGCTTGTTCCGTTGGAGCCTGCTGCTGTGATGAGCAAGCCACAGTGTGCACtccgggagagagaaaaaaggcttCTTGATTGTATAGCATTTCAATATAACATTTCAAAATCCAATTGCAGGAAATACATAGCTTTACAAGCAACTAATGTGCTCAGCTTTCTGTGGGTATACTTTATATTTGTCATTTCCATAATTTTCAGCTCAACTgagctcctgagtggcacagcggtctaaggcactacatctcagtggatgaagcatcactacagacaccctggttcaaaccCAGGCTGTATCACGACTAGCAGTGATTGGAAGTCCTGGGCGTGTGGGAgctggggcggcgcacaattggtcatctgggtttggccggtgtaggccgtcattgtaaataagaatttgttcttaacggacttgccttgAATAAAATAAATAGCAACTATTTTATAATCAAAATATTAGATATGGCTTTAAGATACGAAGCCTGCGAAATGCGCTATTGCGAGTGCATAGGGTAGCAGGGCTACAACTGCAACAAAAAaaggacattacatttacttttagATGAATACATGGCTACTAGCAGTGGGTATTATATTTAGTATTAGTGATCTAGCTAATGTGTTTTGAGTTCTCACTTTTTCATGTGGTGTATAAGCCCCCAAATAAATCTGCCTATGATAAGCGTGCACACAACGATATAGGCAAATTCATCTCTATTGAACAAAAAATATCAGAAAATTCTAGAGCCCTATTTTAACAGTAAAATATACCAACTCACAATTCATGACCATTTTTGGATTAGGTTGCACATCAAAATACTGTATCTGGAATCATGCTTTCCTGCTTGGACGTTAGATAGAACAGCTTATTTCTTGAATAGCCGACCATCTCAGTAGTTATGGtccatcttgggttagttatacaaATCTTTGATTTGACTTTACTCCCATAAAAACTCTGGATGGAAATGTGGTTTGTGGCTAATGAGGCAATACAAATGTGATGTGACTAAAATATGACTCAAATTAAAGTGCGTTCAGTTGACTAAAATGGCTGTTTTTGTCATTTTAACAATGACTAAATCATTATTCAAATCATAAAAATGTGACTAAGATTTAATGATATTTTAGTCAAAATGCCAGACTAGAATGAATCTAAAAAAGAGTGCCAAAATGAACACTGAAGCAGATCTGTCGTGGGGAGGAGCTGGGCGTGTGGGGGCTGGGGATGTTCCAGTATTGGCTTTGGAAGTTGAGAACAGAACGAGCGAACCCGGAGAGATGACTGTTTCTCTCCCTGGGTCCGTCACTGTCCAGGGGTAGGGGCAGACTCATGCAATTCCTCAGGGAAC

Function

NR:

description
patatin-like phospholipase domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1491420 False 2491 lncRNA 0.40 2 53856290 53891901
TU1491421 True 3232 lncRNA 0.39 2 53856290 53859550

Neighbor

gene id symbol gene type direction distance location
sult4a1 LOC106576158 coding downstream 39248 53788678 ~ 53817042 (-)
efcab6 efcab6 coding downstream 69593 53756479 ~ 53786697 (-)
LOC110490308 LOC106576153 coding downstream 271951 53578839 ~ 53584339 (-)
aldh1l2 LOC106576152 coding downstream 280124 53555038 ~ 53576166 (-)
etnk1 LOC106609326 coding downstream 308059 53528016 ~ 53548231 (-)
LOC110490327 LOC106609305 coding upstream 400256 54292157 ~ 54302557 (-)
LOC110490750 LOC106576170 coding upstream 413107 54305008 ~ 54371525 (-)
LOC110490329 LOC106609303 coding upstream 482724 54374625 ~ 54380846 (-)
LOC110490332 LOC106609300 coding upstream 519402 54411303 ~ 54419096 (-)
LOC110490331 LOC106576204 coding upstream 705725 54597626 ~ 54599878 (-)
G1307250 NA non-coding downstream 14057 53745271 ~ 53842233 (-)
G1307199 NA non-coding downstream 184087 53627633 ~ 53672203 (-)
G1307204 NA non-coding downstream 211510 53643904 ~ 53644780 (-)
G1306631 NA non-coding downstream 413295 53442454 ~ 53442995 (-)
G1307316 NA non-coding upstream 402 53892303 ~ 53892980 (-)
G1307335 NA non-coding upstream 2523 53894424 ~ 53894708 (-)
G1307337 NA non-coding upstream 4322 53896223 ~ 53896429 (-)
G1307311 NA non-coding upstream 4783 53896684 ~ 53897042 (-)
G1307306 NA non-coding upstream 27250 53919151 ~ 53986168 (-)
G1306232 LOC106576137 other downstream 794010 53054849 ~ 53062280 (-)
LOC110490288 LOC106609184 other downstream 1046677 52630838 ~ 52809711 (-)
G1304988 NA other downstream 1866117 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 1933762 51921495 ~ 51922528 (-)
G1307309 NA other upstream 7409 53899310 ~ 53922128 (-)
G1307473 NA other upstream 258143 54150044 ~ 54150540 (-)
G1307901 NA other upstream 875071 54766972 ~ 54768422 (-)
LOC110490337 LOC106609287 other upstream 1256874 55148760 ~ 55155353 (-)
LOC110490757 LOC106576193 other upstream 1526422 55417169 ~ 55438953 (-)

Expression


Co-expression Network