G1307453


Basic Information

Item Value
gene id G1307453
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54118258 ~ 54120317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1491579
AAATTATTAAATGGTTTTGCCTCCGACTAAAAATTATGAAATGGTTTTGCCTCGTTAATTTGCTTATTAGTCATTTTTTTCATTGGAACGATGCATCTGCGAGTGTTCAAGGTGCCGTTCTGTGCGCTAATTGCCTTCAGAATACATGGTGCACTCACCAACCGCCACACCGCCCAGAAGGGCTAGGCAGGCCTACATTCCTGTGGGCGACGGAGCGTGGTCGACCACAATAGCCGTTATCCATCGGTAATGATACGGTTACATGTTTGAGGCGAGTGCGGGCCCCTCTCTTTCTACAATAGCGTTTGATTTCATTACTCTAGGCTTACAGCTCGGTGGCTGATTGCCACTAAACGAGCCTGCCTGGCAGTTATGCCACCGCTAGGCTCATCGCAGCACGAGGTGATATTAAATCTCAAGGGTGTACTTGAGGATGGATAGCTCATTAGGAGGAGAGGtgattataatactactactctGGAATGAAGAGCTTTGGGATGGAGTCGCCAAACTAAACCTATTGCTAGTTGTTAATAGTAGTTGATGCTATTATACAGTCCTTTGCGGGTGTCACTATCACCTTAGACAGTCCATTATTGCTCTTGTGCTATTACTGATTCTGTCTCATTCCGTTTATTCATTCACATCTCTCCTCTGTACAGAACCATCTCACATGTCCTCTGGAAAACCTCCCTCTGAGGTGGCCTTATTCCTCTGACCGGGAAAGGTGACGACCCGCTCTCTTTCAAAACCCCTCCGGGGTTAAAGAAGATGAGGCAAAAGGGCAGGAGAGTGGCACATGATTCATGATTTGCAATCAGCCTCCCTCATTACCAAAGCAAATGCAATTAACTGGCGTGTGAGCAGAAGTTGCAATGTAGGCAAGACCTCCAATCGGAATCAAATATCCCATTACTACTGCAGCGGTGGAGGGGGAGTAGTCAGGAATGAGGCTTGAACCAGTGACCCTGTATTGTTACAGTGCGAGGCAGCACACTCTCACCTGTGCCATAGAAGTCCACTCCTCTTAGCAGAGGCCAGTTTCATAGGGAGGCTACACTGTTTGTGGATGCTCCCTCAAGTCGACACCAGCGCCTGGGAAACTTGACACCTTAATTTATTCCCACTCCTCACCAACTGTGGTGGAGTCTGGGGACCTCTGACTCACACAGCGGAGATAAAGCCACAGTCAGCGCTAGTCAGTCTGCATCTCTCAGCTTCACTGGCGTGAGGAGACAGTCCCTGTGTGccctggacacacacagacaacggCAGGAGagagttctctgtgtgtgtgtgtgtgtgtgtgtgttttgggtggCTATAAAGGGCAGGGAACTACCACGTGACACAAAATGCACTTCACCTGAACTTTGCCTACCCCCATCCATCCAGGTAAGTGATTCTGACAGAGGCACGCACTGCAGAGAGACAACAGGCAGTTAGCTGCCCCAGAGAGCAAACACACATCACAGTACTCCACTCAATAGTGAGCTGGGGACTTCAGCTCACTTTTTAAACTGTCTGTGGAAATGGGTTATTTGgttgctgaactgcagtcaggtctctctctccgaCTCTGGCCTTGTTTTCCCTTCTCATACTCAGATCTGATTAGCTTTGCCCAGCACACCACAGCCTATGGCCATCATCATTACCTCCACTCTGCTCCCCAGGGGGAAGAGGCCAACAGGCAGGCTGGAGGAGAGACACCCTCACTGGGACACAGTGGCCAGAGAATCCCCTTGATTATTATCAGGGCAGTTAACTGAAGGGAGTGTAGATAGGCATGGATAATTGGCCACATTTGAAACTTTGACACAATCACCCGTAGGGATCAGCATCACTCTTTCTAACTGGTATCTTATATACTGGGTCTCTCTATACCGCTCTCTCTCACCTCTACTGGTGTGAGACTGAAGATTAATTACTGCAACAGCATCCTAGCATGGCCTGGAACTGTCAGGAACACGCAACATCACCTACAGAAAACGGTCACTCAGTCATACAGGCCAATAGAAatgaagacagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1491579 True 2033 lncRNA 0.49 2 54118258 54120317

Neighbor

gene id symbol gene type direction distance location
sult4a1 LOC106576158 coding downstream 301216 53788678 ~ 53817042 (-)
efcab6 efcab6 coding downstream 331561 53756479 ~ 53786697 (-)
LOC110490308 LOC106576153 coding downstream 533919 53578839 ~ 53584339 (-)
aldh1l2 LOC106576152 coding downstream 542092 53555038 ~ 53576166 (-)
etnk1 LOC106609326 coding downstream 570027 53528016 ~ 53548231 (-)
LOC110490327 LOC106609305 coding upstream 171840 54292157 ~ 54302557 (-)
LOC110490750 LOC106576170 coding upstream 184691 54305008 ~ 54371525 (-)
LOC110490329 LOC106609303 coding upstream 254308 54374625 ~ 54380846 (-)
LOC110490332 LOC106609300 coding upstream 290986 54411303 ~ 54419096 (-)
LOC110490331 LOC106576204 coding upstream 477309 54597626 ~ 54599878 (-)
G1307435 LOC106576165 non-coding downstream 28329 54088578 ~ 54089929 (-)
G1307434 NA non-coding downstream 29956 54087803 ~ 54088302 (-)
G1307433 NA non-coding downstream 31082 54086796 ~ 54087176 (-)
G1307432 NA non-coding downstream 32708 54085261 ~ 54085550 (-)
G1307431 LOC106576165 non-coding downstream 33040 54084774 ~ 54085218 (-)
G1307454 NA non-coding upstream 146 54120463 ~ 54121361 (-)
G1307469 LOC106576167 non-coding upstream 25247 54145564 ~ 54145925 (-)
G1307472 NA non-coding upstream 29056 54149373 ~ 54149670 (-)
G1307474 NA non-coding upstream 32089 54152406 ~ 54152642 (-)
G1307493 NA non-coding upstream 69111 54189428 ~ 54189897 (-)
G1307309 NA other downstream 196130 53899310 ~ 53922128 (-)
G1306232 LOC106576137 other downstream 1055978 53054849 ~ 53062280 (-)
LOC110490288 LOC106609184 other downstream 1308645 52630838 ~ 52809711 (-)
G1304988 NA other downstream 2128085 51989711 ~ 51990173 (-)
G1307473 NA other upstream 29727 54150044 ~ 54150540 (-)
G1307901 NA other upstream 646655 54766972 ~ 54768422 (-)
LOC110490337 LOC106609287 other upstream 1028458 55148760 ~ 55155353 (-)
LOC110490757 LOC106576193 other upstream 1298006 55417169 ~ 55438953 (-)
G1308831 NA other upstream 1435915 55556232 ~ 55556574 (-)

Expression


Co-expression Network