Gene
RNA
| Item | Value |
|---|---|
| gene id | G1306927 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 54186799 ~ 54187064 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1490987 | True | 266 | lncRNA | 0.47 | 1 | 54186799 | 54187064 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110490322 | LOC106576166 | coding | upstream | 69379 | 54104382 ~ 54117420 (+) |
| LOC118938924 | NA | coding | upstream | 90270 | 54095971 ~ 54096529 (+) |
| LOC110490321 | LOC106576165 | coding | upstream | 96867 | 54081785 ~ 54089932 (+) |
| LOC110490320 | LOC106576164 | coding | upstream | 111408 | 54066924 ~ 54075391 (+) |
| LOC110490319 | LOC106576161 | coding | upstream | 120534 | 53988931 ~ 54066265 (+) |
| LOC110490324 | LOC106576203 | coding | downstream | 69440 | 54256504 ~ 54263798 (+) |
| LOC110490325 | LOC106576169 | coding | downstream | 80266 | 54267330 ~ 54281787 (+) |
| LOC110490330 | LOC106576173 | coding | downstream | 196571 | 54383635 ~ 54399850 (+) |
| LOC118938814 | NA | coding | downstream | 830057 | 55016905 ~ 55018391 (+) |
| LOC118938895 | NA | coding | downstream | 836462 | 55023526 ~ 55030917 (+) |
| G1306920 | NA | non-coding | upstream | 32944 | 54153626 ~ 54153855 (+) |
| G1306899 | NA | non-coding | upstream | 46372 | 54092722 ~ 54140427 (+) |
| G1306844 | NA | non-coding | upstream | 108938 | 54075517 ~ 54077861 (+) |
| G1306852 | NA | non-coding | upstream | 255819 | 53929805 ~ 53930980 (+) |
| G1306951 | NA | non-coding | downstream | 79175 | 54266239 ~ 54266464 (+) |
| G1306957 | NA | non-coding | downstream | 102872 | 54289936 ~ 54290184 (+) |
| G1306959 | NA | non-coding | downstream | 104792 | 54291856 ~ 54292177 (+) |
| G1306960 | LOC106576171 | non-coding | downstream | 106065 | 54293129 ~ 54294539 (+) |
| G1306965 | LOC106609305 | non-coding | downstream | 114676 | 54301740 ~ 54301962 (+) |
| LOC110490314 | LOC106576157 | other | upstream | 296408 | 53875911 ~ 53890829 (+) |
| G1306708 | NA | other | upstream | 603447 | 53580541 ~ 53583352 (+) |
| sox5 | LOC106576150 | other | upstream | 811387 | 53352462 ~ 53471763 (+) |
| G1305302 | NA | other | upstream | 1673749 | 52512629 ~ 52513050 (+) |
| G1304886 | NA | other | upstream | 2271789 | 51914597 ~ 51915010 (+) |
| LOC110490339 | LOC106576184 | other | downstream | 970942 | 55157706 ~ 55170847 (+) |
| G1308238 | NA | other | downstream | 1075894 | 55262958 ~ 55278451 (+) |
| G1308299 | LOC106576208 | other | downstream | 1160972 | 55348036 ~ 55349205 (+) |
| LOC110490357 | LOC106609270 | other | downstream | 1382954 | 55569924 ~ 55583925 (+) |
| G1309147 | NA | other | downstream | 1829384 | 56016448 ~ 56016948 (+) |
