G1306957


Basic Information

Item Value
gene id G1306957
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54289936 ~ 54290184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1491017
gccatcagactgctaaacagccaccactaacactgagtggctgctgccaacacactgacactgactcaactccagccactttaataatgggaattgatgggaaatgatgtaaatatatcactagccactttaaacaatgctaccttatataaatgttacttaccctacattattcatctcatatgcatacgtatatactgtactctatatcatcgacggtatccttatgtaatacatgtatcactagcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1491017 True 249 lncRNA 0.39 1 54289936 54290184

Neighbor

gene id symbol gene type direction distance location
LOC110490325 LOC106576169 coding upstream 8149 54267330 ~ 54281787 (+)
LOC110490324 LOC106576203 coding upstream 26138 54256504 ~ 54263798 (+)
LOC110490323 LOC106576167 coding upstream 33570 54145538 ~ 54256366 (+)
LOC110490322 LOC106576166 coding upstream 172516 54104382 ~ 54117420 (+)
LOC118938924 NA coding upstream 193407 54095971 ~ 54096529 (+)
LOC110490330 LOC106576173 coding downstream 93451 54383635 ~ 54399850 (+)
LOC118938814 NA coding downstream 726937 55016905 ~ 55018391 (+)
LOC118938895 NA coding downstream 733342 55023526 ~ 55030917 (+)
LOC110490334 LOC106609296 coding downstream 737487 55027671 ~ 55039809 (+)
LOC100272211 socs2 coding downstream 766668 55056852 ~ 55063742 (+)
G1306951 NA non-coding upstream 23472 54266239 ~ 54266464 (+)
G1306927 NA non-coding upstream 102872 54186799 ~ 54187064 (+)
G1306920 NA non-coding upstream 136081 54153626 ~ 54153855 (+)
G1306899 NA non-coding upstream 149509 54092722 ~ 54140427 (+)
G1306959 NA non-coding downstream 1672 54291856 ~ 54292177 (+)
G1306960 LOC106576171 non-coding downstream 2945 54293129 ~ 54294539 (+)
G1306965 LOC106609305 non-coding downstream 11556 54301740 ~ 54301962 (+)
G1306966 NA non-coding downstream 11941 54302125 ~ 54302519 (+)
G1307007 LOC106576170 non-coding downstream 79990 54370174 ~ 54370802 (+)
LOC110490314 LOC106576157 other upstream 399545 53875911 ~ 53890829 (+)
G1306708 NA other upstream 706584 53580541 ~ 53583352 (+)
sox5 LOC106576150 other upstream 914524 53352462 ~ 53471763 (+)
G1305302 NA other upstream 1776886 52512629 ~ 52513050 (+)
G1304886 NA other upstream 2374926 51914597 ~ 51915010 (+)
LOC110490339 LOC106576184 other downstream 867822 55157706 ~ 55170847 (+)
G1308238 NA other downstream 972774 55262958 ~ 55278451 (+)
G1308299 LOC106576208 other downstream 1057852 55348036 ~ 55349205 (+)
LOC110490357 LOC106609270 other downstream 1279834 55569924 ~ 55583925 (+)
G1309147 NA other downstream 1726264 56016448 ~ 56016948 (+)

Expression


Co-expression Network