Gene
RNA
| Item | Value |
|---|---|
| gene id | G1307966 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 54842963 ~ 54843328 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: uncharacterized protein LOC107384461 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1492120 | True | 366 | lncRNA | 0.41 | 1 | 54842963 | 54843328 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110490330 | LOC106576173 | coding | upstream | 443535 | 54383635 ~ 54399850 (+) |
| LOC110490325 | LOC106576169 | coding | upstream | 561176 | 54267330 ~ 54281787 (+) |
| LOC110490324 | LOC106576203 | coding | upstream | 579165 | 54256504 ~ 54263798 (+) |
| LOC110490323 | LOC106576167 | coding | upstream | 586597 | 54145538 ~ 54256366 (+) |
| LOC110490322 | LOC106576166 | coding | upstream | 725543 | 54104382 ~ 54117420 (+) |
| LOC118938814 | NA | coding | downstream | 173793 | 55016905 ~ 55018391 (+) |
| LOC118938895 | NA | coding | downstream | 180198 | 55023526 ~ 55030917 (+) |
| LOC110490334 | LOC106609296 | coding | downstream | 184343 | 55027671 ~ 55039809 (+) |
| LOC100272211 | socs2 | coding | downstream | 213524 | 55056852 ~ 55063742 (+) |
| LOC110490753 | LOC106609289 | coding | downstream | 269272 | 55112600 ~ 55137177 (+) |
| G1307949 | NA | non-coding | upstream | 17721 | 54825038 ~ 54825242 (+) |
| G1307946 | NA | non-coding | upstream | 20038 | 54822631 ~ 54822925 (+) |
| G1307935 | NA | non-coding | upstream | 29596 | 54813077 ~ 54813367 (+) |
| G1307932 | NA | non-coding | upstream | 31980 | 54810762 ~ 54810983 (+) |
| G1307927 | NA | non-coding | upstream | 32996 | 54807679 ~ 54809967 (+) |
| G1307994 | NA | non-coding | downstream | 19999 | 54863327 ~ 54863576 (+) |
| G1308002 | NA | non-coding | downstream | 30957 | 54874285 ~ 54874517 (+) |
| G1308004 | NA | non-coding | downstream | 37475 | 54880803 ~ 54883607 (+) |
| G1308005 | LOC106576205 | non-coding | downstream | 40481 | 54883809 ~ 54884983 (+) |
| G1308059 | NA | non-coding | downstream | 126130 | 54969458 ~ 54989076 (+) |
| LOC110490314 | LOC106576157 | other | upstream | 952572 | 53875911 ~ 53890829 (+) |
| G1306708 | NA | other | upstream | 1259611 | 53580541 ~ 53583352 (+) |
| sox5 | LOC106576150 | other | upstream | 1467551 | 53352462 ~ 53471763 (+) |
| G1305302 | NA | other | upstream | 2329913 | 52512629 ~ 52513050 (+) |
| G1304886 | NA | other | upstream | 2927953 | 51914597 ~ 51915010 (+) |
| LOC110490339 | LOC106576184 | other | downstream | 314678 | 55157706 ~ 55170847 (+) |
| G1308238 | NA | other | downstream | 419630 | 55262958 ~ 55278451 (+) |
| G1308299 | LOC106576208 | other | downstream | 504708 | 55348036 ~ 55349205 (+) |
| LOC110490357 | LOC106609270 | other | downstream | 726690 | 55569924 ~ 55583925 (+) |
| G1309147 | NA | other | downstream | 1173120 | 56016448 ~ 56016948 (+) |
