G1308238


Basic Information

Item Value
gene id G1308238
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55262958 ~ 55278451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1492428
ATTTATTtcaggagagaaaaaaacaactcAGTCATTCTGGCTTCTGTCATCGTCATGGTAAGTGATATGTGCACATGATTGTCGAAGGCATCGGATATACAAGCCCCATAACAGAAGGTCATCACAGCACAGTAAGAGTGGCAGGGCAACTCACTCTGCCACACAAAATGGAAGGAGGTGTCTGCTTAACGAAGTAGGACGAAAGTTGCCCCTTACCACTGATACAAGGTCAGATATTTTCTCATCCCCCTAATGGCTTAGGTTCAGATCAAAGGAGGGTATTCTGATCCTAGATCTACGGTTGTAAGTATCTATTGATTAAGGTTCAGATTTAGGGAGGATATTTTTATGATCTATGTTTATGTTTATATCAAACGGTTAAGGTTTAGATTAAGGGAGAGTtttctgatcctagatctgtggttaaagGGAACATCTACCAGGAGTCGTTAGTGAGAGACCGCCACACAAGATGGACGTTTGTTTTGGTCACATGCAGAGTAAATAAGGCCCATTCCCCGGGCTCTGGACCTCACAGGAACCCACAGGGAGATGCAGTGGTCCCCAACAATACTCTGCTCTCTATGGACACATTGATCTTCTTCTTTAGATATAGATACAAACATCATTCAATGGCATATCAAGTTAATGCAAACAGTTGTGGAGGTGGATTTCTTTAAGCACTTTTCAACATGCTTTGCATTTCATCTTCAGAAAAACCTTGTGATGCATtgtgggatttttttttctcatgacAGTTGATCATGGGCATGTGTTTAGGTGTGTTGTGATCAAGGGGGCAAAGTGGACGACCGATGACTTAGGCAGAtacgtgtaaaaaaaaaacagctcagCTCCATAACAGTGGATGTCGTATCAGTCAAAGCTTCAACGTTTACACACATTGCAAACTAAAGCCTGAGTTTACttttacaattattttttttttgatCAGATATTGTTTAGAATGCTGATGGCGTTATCTCCATGGTAACTCTGTAGATGGCAGTTACTGAGTGTTTGGTACAGTATGCTCTGAATATTGTGGTATCAAAGCCCAGTATTGTGTGGGATGGAGGGGTGCTGTAGCTCATTTAAAACACATTAAACATTCCAAAGAAAATACAAtcaaccccccccacacacacgccGGCACTGCACAACATTCGCTAAGGTTATCTTAAAAATTATCATTCATATTCACAATTTATTTACAAGACGTTTCCAACAAATATATTCATTCATATCAGAAAACAAAATGCTTGcctcaataaaaaataaataaataaacaaaaacagaCCCCTAAAGTAAAGTCTACCCACCCCCTAAAAGAATCCAGTCCATGACATCACTCTTAATGATGGTTGACCCAGCACCACGAAGCCAGGTAATAATACTGCATTATGACCCCTAAATGTAGGCTATATGCATGCTGTGTCTGGCCCTTGTCTGGTTAGGGGACCCTGGTGTCTTGAGCGTAACAGTCCCAGTGTTGGGTGAAACTTCTACAGTATACAGTGAACTGGTCTTAAAGAAActagaaagaaaaagagagggagggagggtgggacagAGAAGAAAGAAGAAGGCAAGGGGGAGAGAAATCGAAAACATCTCGTCTTCGGTCATCTTTCTCCAGATAATCAGAGTTCAGCCCTTAAGTTTCAAAACAATCCATTTCTCAGTGGGGATCGGCCAGGGTTATAGGTCTAGCTCATAGCTAACCATCAGTTTTTAATCAGGTAAATTCAGTTTGTCCTCATGTTCTCTGTTTCAAGACTGCTTTGGCTAGACATTACAATGACAAAGGGATCGTTGGACTTGCATTTAACAGAGGCAGACCACTGGACACTCTGTAGACAAATCTGTGCTCTCCAGCGGTTTCTATAGCAACAAGGGTCACCACGGCGCCCAGTCCAAATCCCTGAGAACTTGTGTACTGGGTGCCGATTGATGATGTCATCATGATGATGGCTCTTGTGGTGAGGTCATGGCTTTGCAAAAGGGATGGGGGTAGAGACAACAGCTCCACCATCTTGGATCGTGGGAAACTGATACTGTAGGTCAGGGGTTCCCATGCTTACACGACACTACAGAAATGGCTGCTCTTCTACATGGACTTTTTCTGGGGCCCATTTGGAAGTGCCTGGTTTCCTACCTGTAGCCCCTGATCTTTAGGGTGGGAAACCCCACATATAACTAACTGGTGATGGTTAAAACTAACAGCACTCTTCAACTCTATCCTAAACCTGCAGTGCGTttcataatatactgtatatgcgtCCCCTATAGGATGGTCGTTATGAAAGTCTTCTAAAGTAAGACAATAATTAAACATTGTGCATGTTTCCCTTAACAAAGATGTTGTACAATGCTCTTACCCCATTTTGGGCATTTTACAGTTTACATTCTCTATTCTCTGTCTGATAAATTCACGTAGATGAAGAGTCTAACTTGGTGGCTGTACACACATTATCTACGTCTGAAACCGCGTCCAAACCTCATGTGCAAATAGATAAAGCGCTTACTCATGAAACATCACTCAACAGTCTTATGGTACTTTTAAAGCACGTCTTAAACATGGACGCAAACTAAGAGAAATCAACATGAACATGGAAAAAAAGCGCAAGAAAATAGAAATGAAAAATAATCCAGTTGGTAACTGTTAGCCCAGCGGATGaaatatagaaaataaacagaatTTTAAAAACTCACAAGTAGAACCTTATAGAAGATGTAGGAAAAACTAGAGGGAAATTGAGTTTGACTGACATAGACAACACCCAATTCGACAGAAGCTTTTGAAAACACACCCACTTCACTCATCATGGtctctgacagaaacaaacactcAAAGGTAAACCAATCAGTAATACTCTCGGAGTGGGTGTGGTTCCACAGAGTCGACACAATGGGCGTGTCCAAGGTGAGTATggcatgttgttattggtgtaaTGGGTTTAGAGTCCTCTGCTCTCCCAGTCCTCCCAGATGCAGCATGGGGGAGGGGCAGGGCAGGGGGCAGGCTGGGAGGGGGTAGTAGGGGCAAGGTAAGGAAAGGGAGGGTGCGGTTTTcgctccgctctctctctcacagcgcCGTAGCCTCCCAGCTGGTCCCCCGCGGGACCTGGCGTCACTTAGTCTCTGTTAGTACCGTGGCAACAGTAGAGGGGTGGGGCCGGGTGAGCTCCGTCCCCccggagggggaggaggaggctgCAGATGCCAGGCTGCAGGGGGTGGGAGTGGCTGGGGCACCTGGAGGGAGAACAGAAGCTATGAACACACAGT
>TU1492429
ATTTATTtcaggagagaaaaaaacaactcAGTCATTCTGGCTTCTGTCATCGTCATGGTAAGTGATATGTGCACATGATTGTCGAAGGCATCGGATATACAAGCCCCATAACAGAAGGTCATCACAGCACAGTAAGAGTGGCAGGGCAACTCACTCTGCCACACAAAATGGAAGGAGGTGTCTGCTTAACGAAGTAGGACGAAAGTTGCCCCTTACCACTGATACAAGGTCAGATATTTTCTCATCCCCCTAATGGCTTAGGTTCAGATCAAAGGAGGGTATTCTGATCCTAGATCTACGGTTGTAAGTATCTATTGATTAAGGTTCAGATTTAGGGAGGATATTTTTATGATCTATGTTTATGTTTATATCAAACGGTTAAGGTTTAGATTAAGGGAGAGTtttctgatcctagatctgtggttaaagGGAACATCTACCAGGAGTCGTTAGTGAGAGACCGCCACACAAGATGGACGTTTGTTTTGGTCACATGCAGAGTAAATAAGGCCCATTCCCCGGGCTCTGGACCTCACAGGAACCCACAGGGAGATGCAGTGGTCCCCAACAATACTCTGCTCTCTATGGACACATTGATCTTCTTCTTTAGATATAGATACAAACATCATTCAATGGCATATCAAGTTAATGCAAACAGTTGTGGAGGTGGATTTCTTTAAGCACTTTTCAACATGCTTTGCATTTCATCTTCAGAAAAACCTTGTGATGCATtgtgggatttttttttctcatgacAGTTGATCATGGGCATGTGTTTAGGTGTGTTGTGATCAAGGGGGCAAAGTGGACGACCGATGACTTAGGCAGAtacgtgtaaaaaaaaaacagctcagCTCCATAACAGTGGATGTCGTATCAGTCAAAGCTTCAACGTTTACACACATTGCAAACTAAAGCCTGAGTTTACttttacaattattttttttttgatCAGATATTGTTTAGAATGCTGATGGCGTTATCTCCATGGTAACTCTGTAGATGGCAGTTACTGAGTGTTTGGTACAGTATGCTCTGAATATTGTGGTATCAAAGCCCAGTATTGTGTGGGATGGAGGGGTGCTGTAGCTCATTTAAAACACATTAAACATTCCAAAGAAAATACAAtcaaccccccccacacacacgccGGCACTGCACAACATTCGCTAAGGTTATCTTAAAAATTATCATTCATATTCACAATTTATTTACAAGACGTTTCCAACAAATATATTCATTCATATCAGAAAACAAAATGCTTGcctcaataaaaaataaataaataaacaaaaacagaCCCCTAAAGTAAAGTCTACCCACCCCCTAAAAGAATCCAGTCCATGACATCACTCTTAATGATGGTTGACCCAGCACCACGAAGCCAGGTAATAATACTGCATTATGACCCCTAAATGTAGGCTATATGCATGCTGTGTCTGGCCCTTGTCTGGTTAGGGGACCCTGGTGTCTTGAGCGTAACAGTCCCAGTGTTGGGTGAAACTTCTACAGTATACAGTGAACTGGTCTTAAAGAAActagaaagaaaaagagagggagggaggcagagagacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1492428 False 3295 TUCP 0.44 2 55262958 55266276
TU1492429 True 1576 lncRNA 0.41 3 55262958 55278451

Neighbor

gene id symbol gene type direction distance location
LOC110490343 LOC106576187 coding upstream 2259 55251777 ~ 55260699 (+)
LOC110490342 NA coding upstream 19126 55239996 ~ 55243832 (+)
LOC110490340 pahx coding upstream 38523 55218592 ~ 55224435 (+)
LOC110490339 LOC106576184 coding upstream 92111 55157706 ~ 55170847 (+)
LOC110490753 LOC106609289 coding upstream 125781 55112600 ~ 55137177 (+)
LOC110490345 nudt5 coding downstream 64353 55342804 ~ 55346856 (+)
LOC118938815 NA coding downstream 74303 55352754 ~ 55356008 (+)
LOC110511067 rbm17 coding downstream 97969 55376420 ~ 55382696 (+)
LOC110490350 LOC106576192 coding downstream 106004 55384455 ~ 55394138 (+)
LOC110490357 LOC106609270 coding downstream 291473 55569924 ~ 55583925 (+)
G1308227 NA non-coding upstream 20478 55241014 ~ 55242480 (+)
G1308220 NA non-coding upstream 37738 55224884 ~ 55225220 (+)
G1308155 NA non-coding upstream 139099 55123401 ~ 55123859 (+)
G1308108 NA non-coding upstream 211090 55051623 ~ 55051868 (+)
G1308246 NA non-coding downstream 177 55278628 ~ 55278966 (+)
G1308247 NA non-coding downstream 1246 55279697 ~ 55280057 (+)
G1308248 NA non-coding downstream 3784 55282235 ~ 55282650 (+)
G1308249 NA non-coding downstream 6083 55284534 ~ 55284972 (+)
G1308252 NA non-coding downstream 10067 55288518 ~ 55288748 (+)
LOC110490314 LOC106576157 other upstream 1372567 53875911 ~ 53890829 (+)
G1306708 NA other upstream 1679606 53580541 ~ 53583352 (+)
sox5 LOC106576150 other upstream 1887546 53352462 ~ 53471763 (+)
G1305302 NA other upstream 2749908 52512629 ~ 52513050 (+)
G1308299 LOC106576208 other downstream 69585 55348036 ~ 55349205 (+)
G1309147 NA other downstream 737997 56016448 ~ 56016948 (+)
G1309163 LOC100136012 other downstream 758451 56036902 ~ 56037403 (+)
G1309787 NA other downstream 1633880 56912331 ~ 56914223 (+)

Expression


Co-expression Network