G1308247


Basic Information

Item Value
gene id G1308247
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55279697 ~ 55280057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1492438
GTCTTCTAGTTACTCTCTGAACCTAAATACTGATCTTGGATCAGCTTAAATCAATCTCAATTCTAACCTTAACCGCCATAAGATACAAACATAACTATCAATATAAAATAATAACCTATATACTACACAAGAACAACCAGGTTCACTGCACCTCTCGTTGCTGCACAGAGAGATTGATGGAGAATGAGCATAGGGTCAAATATATTTCTCTCAAAAACTGCAGAGATTTGCATTGGATGAATATTGAATACACAAACAAaaagcacatgcacacacacattggcGGAGTGAGTGTGAATCTGGGGGGCATCGTCACAGTGACAGATCAAATAAGAGCAGGAAGAAAGTTACATTCTAAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1492438 True 361 lncRNA 0.38 1 55279697 55280057

Neighbor

gene id symbol gene type direction distance location
LOC110490343 LOC106576187 coding upstream 18998 55251777 ~ 55260699 (+)
LOC110490342 NA coding upstream 35865 55239996 ~ 55243832 (+)
LOC110490340 pahx coding upstream 55262 55218592 ~ 55224435 (+)
LOC110490339 LOC106576184 coding upstream 108850 55157706 ~ 55170847 (+)
LOC110490753 LOC106609289 coding upstream 142520 55112600 ~ 55137177 (+)
LOC110490345 nudt5 coding downstream 62747 55342804 ~ 55346856 (+)
LOC118938815 NA coding downstream 72697 55352754 ~ 55356008 (+)
LOC110511067 rbm17 coding downstream 96363 55376420 ~ 55382696 (+)
LOC110490350 LOC106576192 coding downstream 104398 55384455 ~ 55394138 (+)
LOC110490357 LOC106609270 coding downstream 289867 55569924 ~ 55583925 (+)
G1308246 NA non-coding upstream 731 55278628 ~ 55278966 (+)
G1308238 NA non-coding upstream 1246 55262958 ~ 55278451 (+)
G1308227 NA non-coding upstream 37217 55241014 ~ 55242480 (+)
G1308220 NA non-coding upstream 54477 55224884 ~ 55225220 (+)
G1308248 NA non-coding downstream 2178 55282235 ~ 55282650 (+)
G1308249 NA non-coding downstream 4477 55284534 ~ 55284972 (+)
G1308252 NA non-coding downstream 8461 55288518 ~ 55288748 (+)
G1308253 NA non-coding downstream 8843 55288900 ~ 55289104 (+)
G1308255 NA non-coding downstream 10954 55291011 ~ 55291261 (+)
LOC110490314 LOC106576157 other upstream 1389306 53875911 ~ 53890829 (+)
G1306708 NA other upstream 1696345 53580541 ~ 53583352 (+)
sox5 LOC106576150 other upstream 1904285 53352462 ~ 53471763 (+)
G1308299 LOC106576208 other downstream 67979 55348036 ~ 55349205 (+)
G1309147 NA other downstream 736391 56016448 ~ 56016948 (+)
G1309163 LOC100136012 other downstream 756845 56036902 ~ 56037403 (+)
G1309787 NA other downstream 1632274 56912331 ~ 56914223 (+)

Expression


Co-expression Network