G1308817 (LOC106576195)


Basic Information

Item Value
gene id G1308817
gene name LOC106576195
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55510209 ~ 55531802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1493149
actttacctcacctcctagtataatacaacacctgtagttggactttacctgacctcctcgtacaatacaacacctgtagctggactttacttgacctcctagtataatacaacacctttagtggactttacctgacctcctagtataatacaacacctgtagtggactttatctgacctcctagtataatacaacacctgtagctggactttacctaacctcctagtataatacaacacctgtagctggactttacctcacctcctagtataatacaacacctgtagctggactttacccgACCTCCTAGTATAACACAACACCTGtggctggactttacctgacctcctcatacaatacaacacctgtagctggactttacttgacctcctagtataatacaacacctgtagctgggctttacctgacctcctagtataatacaacacctgtagctggactttacctaacctcctagtataatacaacacctgtagtggactttacctaacctcctagtataatacaacacctgtagctggactttacctcacctcctagtataatacaacacctgtagctggactttacttgaactcctagtataatacaacacctgtagtggactttacctggCCTCCTAGGATAGTAAAGCATCTGTATTGGACTTACccgacctcctagtataatacaacacctgtagctggactttacctcgcctcctagtataatacaacacctgtagctggactttaccttacctcctagtataatacaacacctgtagctggactttacttgacctcctagtataataagac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106576195 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1493149 True 822 lncRNA 0.42 2 55510209 55531802

Neighbor

gene id symbol gene type direction distance location
LOC110490757 LOC106576193 coding downstream 71256 55417169 ~ 55438953 (-)
LOC110490348 LOC100136332 coding downstream 136105 55355672 ~ 55374104 (-)
LOC118938816 NA coding downstream 137725 55371010 ~ 55372484 (-)
LOC110490346 LOC106576189 coding downstream 167510 55332272 ~ 55342699 (-)
LOC110490344 LOC106576188 coding downstream 179457 55262938 ~ 55330752 (-)
LOC110490354 LOC106576197 coding upstream 52844 55584646 ~ 55604469 (-)
LOC110490355 LOC106576199 coding upstream 85879 55617681 ~ 55623649 (-)
LOC110490369 LOC106576218 coding upstream 1122948 56654750 ~ 56658049 (-)
LOC110490368 LOC106576221 coding upstream 1179265 56711067 ~ 56776535 (-)
LOC110490364 LOC106576219 coding upstream 1194509 56726311 ~ 56730594 (-)
G1308814 NA non-coding downstream 16542 55493451 ~ 55493667 (-)
G1308810 NA non-coding downstream 25083 55484862 ~ 55485126 (-)
G1308809 NA non-coding downstream 25462 55484343 ~ 55484747 (-)
G1308808 NA non-coding downstream 27451 55482538 ~ 55482758 (-)
G1308802 NA non-coding downstream 43163 55466721 ~ 55467046 (-)
G1308829 NA non-coding upstream 5552 55537354 ~ 55540366 (-)
G1308845 NA non-coding upstream 99326 55631128 ~ 55631900 (-)
G1308850 NA non-coding upstream 106425 55638227 ~ 55638435 (-)
G1308859 NA non-coding upstream 126612 55658414 ~ 55658626 (-)
G1308863 NA non-coding upstream 132547 55664349 ~ 55664849 (-)
LOC110490337 LOC106609287 other downstream 358098 55148760 ~ 55155353 (-)
G1307901 NA other downstream 741787 54766972 ~ 54768422 (-)
G1307473 NA other downstream 1359669 54150044 ~ 54150540 (-)
G1307309 NA other downstream 1588081 53899310 ~ 53922128 (-)
G1308831 NA other upstream 24430 55556232 ~ 55556574 (-)
G1308906 NA other upstream 214483 55746285 ~ 55747753 (-)
G1309187 NA other upstream 522689 56054491 ~ 56055064 (-)
G1310261 LOC106609352 other upstream 1439939 56971741 ~ 56973518 (-)
LOC110490385 LOC106576235 other upstream 1594012 57125783 ~ 57143499 (-)

Expression


Co-expression Network