G1308845


Basic Information

Item Value
gene id G1308845
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55631128 ~ 55631900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1493177
caaatacaattgcattttattgatggtaatttgaatgcatcaatacgtgatgagatcctgagacccattgtcatgccattcatcctctgccatcacctcatgtttcagcatgataatgcatggcacCATTTCACAAGGACCTGTACACAATTCCAGGAAGCTGAACATTTTTCAATTCTTCCATGGACTGCATACtcaagacatgtcacccattgagcatgtttggaatcgacagcgtgttccagttcccgccaatatccagcaacttcacacagccattgaagagtgggacaacattccacaggcgacaatcaaaagcctgatcaactccatgtgaaggagatgtctcgctgcatgaggcaaatggtggtcaccagacactgactggttttctgataccttcttttttttaagggtctgtgatcaacagatgcatatctgtattcccagtcatgtgaaatccatagattagggcctaattcatttatttcaatcggctgatttccatatatgaattgtaactcagtaaaatctttgatattattgcgtttatatattttttcagggTAGACAAATACCATAACTTTTATTTCAAAGGAATTGAGTGCAATGATAACCTTTTGAGAGATACATTGATCTACATTGAACTTTTTATAGtccccgtaccccttcaaacattcaacctccatctgccgtaccccctctagcactagggtcagcgcactctcaaatgttgttttttgacatcattgtaagcctgccagaCCCACACT

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1493177 True 773 lncRNA 0.41 1 55631128 55631900

Neighbor

gene id symbol gene type direction distance location
LOC110490355 LOC106576199 coding downstream 7479 55617681 ~ 55623649 (-)
LOC110490354 LOC106576197 coding downstream 26659 55584646 ~ 55604469 (-)
LOC110490351 LOC106576194 coding downstream 65018 55460350 ~ 55566110 (-)
LOC110490757 LOC106576193 coding downstream 192175 55417169 ~ 55438953 (-)
LOC110490348 LOC100136332 coding downstream 257024 55355672 ~ 55374104 (-)
LOC110490369 LOC106576218 coding upstream 1022850 56654750 ~ 56658049 (-)
LOC110490368 LOC106576221 coding upstream 1079167 56711067 ~ 56776535 (-)
LOC110490364 LOC106576219 coding upstream 1094411 56726311 ~ 56730594 (-)
LOC110490367 LOC106609343 coding upstream 1100406 56732306 ~ 56734711 (-)
LOC118938817 NA coding upstream 1147756 56779656 ~ 56782516 (-)
G1308829 NA non-coding downstream 90762 55537354 ~ 55540366 (-)
G1308817 LOC106576195 non-coding downstream 99326 55510209 ~ 55531802 (-)
G1308814 NA non-coding downstream 137461 55493451 ~ 55493667 (-)
G1308810 NA non-coding downstream 146002 55484862 ~ 55485126 (-)
G1308809 NA non-coding downstream 146381 55484343 ~ 55484747 (-)
G1308850 NA non-coding upstream 6327 55638227 ~ 55638435 (-)
G1308859 NA non-coding upstream 26514 55658414 ~ 55658626 (-)
G1308863 NA non-coding upstream 32449 55664349 ~ 55664849 (-)
G1308872 NA non-coding upstream 53081 55684981 ~ 55685191 (-)
G1308873 NA non-coding upstream 54550 55686450 ~ 55686673 (-)
G1308831 NA other downstream 74554 55556232 ~ 55556574 (-)
LOC110490337 LOC106609287 other downstream 479017 55148760 ~ 55155353 (-)
G1307901 NA other downstream 862706 54766972 ~ 54768422 (-)
G1307473 NA other downstream 1480588 54150044 ~ 54150540 (-)
G1308906 NA other upstream 114385 55746285 ~ 55747753 (-)
G1309187 NA other upstream 422591 56054491 ~ 56055064 (-)
G1310261 LOC106609352 other upstream 1339841 56971741 ~ 56973518 (-)
LOC110490385 LOC106576235 other upstream 1493914 57125783 ~ 57143499 (-)
LOC110490387 LOC106609365 other upstream 1610780 57231181 ~ 57247843 (-)

Expression


Co-expression Network