XLOC_003204 (gadd45ba)


Basic Information

Item Value
gene id XLOC_003204
gene name gadd45ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6456146 ~ 6457748 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006315
AGAACCAACTTCTCAGGCACAGAGAAACGAGCAAAGGAATACTGCAACTCCTAGCGACTTTTGGATTATACTCCGAACACTATACACACTTTGACTGGATTTTAATATTTCCGAGTTTATCCGGAGACTTGTGGATTACCACTATTTGAAGCAAAATGACCCTGGAAGAAGTCGTTGGATGCAACATTACTGATACAAAAATGGACACCGTGAGCCAAGCATTGGAAGAGCTGCTGGTAGCAGCGCAGAGGCAGGACTGTCTCACAGTCGGCGTTTATGAGTCTGCAAAACTAATGAATGTAGATCCAGACTGCGTTGTGTTGTGCATTCTGGCCACCGATGAGGAGGATCTGGACGACATTGCGCTGCAGATTCACTTCACGCTCCTGCAGGCGTTCTGCTGCGATAACGACATCAACATCCTGCGGGTGTCCGGACTGAGACGCCTGGCACAGGTGCTCGACGAGCCGGCCACCGTGGAAAACAGCGAGCCCAGAGATTTCCACTGCATCCTCGTCACTAACTCTCAATGCCAGCCTCTCAAATGCCAGGCACTGAAGGACGTGGGCACCTACTGTGAGGAGAGCCGTTGCAAAAACCAATGGATTCCTTATCTGTCCCTGCAAGAACGCTGAACTATTCGCGATGCTGTTTCTGCAACGAAAGGATGAAAGAGTCATTCTCTGCGAATGAAAGCAAACGGGCTCTGCAACAGCCGCCGTTGACTGCTGCGTCATGGGGATGGAGCTGTGTGAGAGAAAGTGGAGCTCCTGGAACTGTGCGCATGGTACATTCCACCCTGCCCCTTCAGCTTGTCGTGTCCTCTGTGGGGGAAAAGAAGTGGTCGTTTTTGGTAGCGGAGGAACAAGTTGTGGGAACATGAGCTGTGAAAGCTGCCTGTCGGCGCAAGCTGTGCGAGAGAACTTGCACGCGGGCGGCGTGGGCGCGCGCCCAAGCCTCATATGTGCAATGGGGTTGGAAAGCGACGGGTGTATACGTCACTATCGCTGAATGCGGGACGAACATTTTGAAAGACTGAGCTAATAATCTGTGTATGTGCTGGATATTGTATCTGATAGTTGCCTATCAGTATCTGCAAATGGACTGAAATCGCTTCTGTTTGTCTGCACTGAAAAGGACCGTGTTTGTGGAAAACAAAATCTGTTGAGCTAATGAGAAATGCATACTATGAATTGATGTAATTTATTCCTAGTAATTTAAACAGAGTAATATATACATTGCTGCTCATGTCAAATGCAATGCTGTTTCAATAAATTATTGATTGAGAATTTAAA
>TCONS_00006316
AACCAACTTCTCAGGCACAGAGAAACGAGCAAAGGAATACTGCAACTCCTAGCGACTTTTGGATTATACTCCGAACACTATACACACTTTGACTGGATTTTAATATTTCCGAGTTTATCCGGAGACTTGTGGATTACCACTATTTGAAGCAAAATGACCCTGGAAGAAGTCGTTGGATGCAACATTACTGATACAAAAATGGACACCGTGAGCCAAGCATTGGAAGAGCTGCTGGTAGCAGCGCAGAGGCAGGACTGTCTCACAGTCGGCGTTTATGAGTCTGCAAAACTAATGAATGTGTAAGTATACACTTGTGGTTCACTTTCATGCATCTTAATAATGCACAGTAATCGCTTTATCATCATAAACAAGATACTAATCGCAATAAAATCTGATTTACAGAGATCCAGACTGCGTTGTGTTGTGCATTCTGGCCACCGATGAGGAGGATCTGGACGACATTGCGCTGCAGATTCACTTCACGCTCCTGCAGGCGTTCTGCTGCGATAACGACATCAACATCCTGCGGGTGTCCGGACTGAGACGCCTGGCACAGGTGCTCGACGAGCCGGCCACCGTGGAAAACAGCGAGCCCAGAGATTTCCACTGCATCCTCGTCACTAACTCTCAATGCCAGCCTCTCAAATGCCAGGCACTGAAGGACGTGGGCACCTACTGTGAGGAGAGCCGTTGCAAAAACCAATGGATTCCTTATCTGTCCCTGCAAGAACGCTGAACTATTCGCGATGCTGTTTCTGCAACGAAAGGATGAAAGAGTCATTCTCTGCGAATGAAAGCAAACGGGCTCTGCAACAGCCGCCGTTGACTGCTGCGTCATGGGGATGGAGCTGTGTGAGAGAAAGTGGAGCTCCTGGAACTGTGCGCATGGTACATTCCACCCTGCCCCTTCAGCTTGTCGTGTCCTCTGTGGGGGAAAAGAAGTGGTCGTTT
>TCONS_00006317
AGGCACAGAGAAACGAGCAAAGGAATACTGCAACTCCTAGCGACTTTTGGATTATACTCCGAACACTATACACACTTTGACTGGATTTTAATATTTCCGAGTTTATCCGGAGACTTGTGGATTACCACTATTTGAAGCAAAATGACCCTGGAAGAAGTCGTTGGATGCAACATTACTGATACAAAGTAAGTTCCTTTTATTGCACGCATGCATGTCTTTTATAGTAGAGTCTAACTGAGCAGATGAGTGTACAGAAAGTATTGTCGCTGACCATAGCCGCGTTATTTCTACAGAATGGACACCGTGAGCCAAGCATTGGAAGAGCTGCTGGTAGCAGCGCAGAGGCAGGACTGTCTCACAGTCGGCGTTTATGAGTCTGCAAAACTAATGAATGTAGATCCAGACTGCGTTGTGTTGTGCATTCTGGCCACCGATGAGGAGGATCTGGACGACATTGCGCTGCAGATTCACTTCACGCTCCTGCAGGCGTTCTGCTGCGATAACGACATCAACATCCTGCGGGTGTCCGGACTGAGACGCCTGGCACAGGTGCTCGACGAGCCGGCCACCGTGGAAAACAGCGAGCCCAGAGATTTCCACTGCATCCTCGTCACTAACTCTCAATGCCAGCCTCTCAAATGCCAGGCACTGAAGGACGTGGGCACCTACTGTGAGGAGAGCCGTTGCAAAAACCAATGGATTCCTTATCTGTCCCTGCAAGAACGCTGAACTATTCGCGATGCTGTTTCTGCAACGAAAGGATGAAAGAGTCATTCTCTGCGAATGAAAGCAAACGGGCTCTGCAACAGCCGCCGTTGACTGCTGCGTCATGGGGATGGAGCTGTGTGAGAGAAAGTGGAGCTCCTGGAACTGTGCGCATGGTACATTCCACCCTGCCCCTT
>TCONS_00006318
AACGAGCAAAGGAATACTGCAACTCCTAGCGACTTTTGGATTATACTCCGAACACTATACACACTTTGACTGGATTTTAATATTTCCGAGTTTATCCGGAGACTTGTGGATTACCACTATTTGAAGCAAAATGACCCTGGAAGAAGTCGTTGGATGCAACATTACTGATACAAAAATGGACACCGTGAGCCAAGCATTGGAAGAGCTGCTGGTAGCAGCGCAGAGGCAGGACTGTCTCACAGTCGGCGTTTATGAGTCTGCAAAACTAATGAATGTGTAAGTATACACTTGTGGTTCACTTTCATGCATCTTAATAATGCACAGTAATCGCTTTATCATCATAAACAAGATACTAATCGCAATAAAATCTGATTTACAGAGATCCAGACTGCGTTGTGTTGTGCATTCTGGCCACCGATGAGGAGGATCTGGACGACATTGCGCTGCAGATTCACTTCACGCTCCTGCAGGCGTTCTGCTGCGATAACGACATCAACATCCTGCGGGTGTCCGGACTGAGACGCCTGGCACAGGTGCTCGACGAGCCGGCCACCGTGGAAAACAGCGAGCCCAGAGATTTCCACTGCATCCTCGTCACTGTAAGTAGACACATACAGCTTATCATATGCGGTTTTAAGAGGTGCATCTTTAATTTCGCACGACAGTTACTTACCTTTCGTTTTTATGTTTACGCAGAACTCTCAATGCCAGCCTCTCAAATGCCAGGCACTGAAGGACGTGGGCACCTACTGTGAGGAGAGCCGTTGCAAAAACCAATGGATTCCTTATCTGTCCCTGCAAGAACGCTGAACTATTCGCGATGCTGTTTCTGCAACGAAAGGATGAAAGAGTCATTCTCTGCGAATGAAAGCAAACGGGCTCTGCAACAGCCGCCGTTGACTGCTGCGTCATGGGGA

Function

symbol description
gadd45ba Acts upstream of or within several processes, including regulation of glomerular visceral epithelial cell apoptotic process; response to methylmercury; and somitogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including EVL; axis; cleithrum; mesoderm; and nervous system. Orthologous to human GADD45B (growth arrest and DNA damage inducible beta).

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0000185 activation of MAPKKK activity biological_process
GO:0046686 response to cadmium ion biological_process
GO:1904633 regulation of glomerular visceral epithelial cell apoptotic process biological_process
GO:0051597 response to methylmercury biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1971 Acts upstream of or within several processes, including regulation of glomerular visceral epithelial cell apoptotic process; response to methylmercury; and somitogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including EVL; axis; cleithrum; mesoderm; and nervous system. Orthologous to human GADD45B (growth arrest and DNA damage inducible beta).

Ensembl:

ensembl_id ENSDARG00000027744

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006315 False 1295 mRNA 0.48 4 6456146 6457748
TCONS_00006316 False 951 lncRNA 0.49 3 6456148 6457303
TCONS_00006317 False 902 lncRNA 0.50 3 6456160 6457261
TCONS_00006318 True 917 lncRNA 0.47 2 6456171 6457195

Neighbor

gene id symbol gene type direction distance location
XLOC_003203 CU062501.1 coding upstream 11983 6443457 ~ 6444163 (+)
XLOC_003202 VMAC coding upstream 21546 6431133 ~ 6434600 (+)
XLOC_003201 FO681393.1 coding upstream 32986 6422374 ~ 6423160 (+)
XLOC_003200 AL840638.3 coding upstream 78076 6374448 ~ 6378070 (+)
XLOC_003199 AL840638.2 coding upstream 128053 6327978 ~ 6328093 (+)
XLOC_003205 NA coding downstream 2876 6460624 ~ 6513018 (+)
XLOC_003206 NA coding downstream 178674 6636422 ~ 6642487 (+)
XLOC_003207 si:dkey-246j7.1 coding downstream 193218 6650966 ~ 6656271 (+)
XLOC_003208 CR381534.1 coding downstream 200908 6658656 ~ 6678209 (+)
XLOC_003209 pde4cb coding downstream 227220 6684968 ~ 6794144 (+)
XLOC_003250 BX324177.11 misc downstream 4888055 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 4915138 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 4928614 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 4960285 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 4971645 11429393 ~ 11429689 (+)
XLOC_003198 AL840638.1 non-coding upstream 131844 6322998 ~ 6324302 (+)
XLOC_003195 BX248501.1 non-coding upstream 232026 6205969 ~ 6224120 (+)
XLOC_003189 CT573239.2 non-coding upstream 381363 6069875 ~ 6074783 (+)
XLOC_003210 NA non-coding downstream 350348 6808096 ~ 6816005 (+)
XLOC_003212 BX936438.2 non-coding downstream 404504 6862252 ~ 6862368 (+)

Expression


Co-expression Network