G1310169


Basic Information

Item Value
gene id G1310169
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 56826473 ~ 56832210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1494670
AAACATGGCTGCCCTGGTCATGATAGATGAGGCACAGCTTCCAGTGTGTCAGACCCCCTGTTGTTTGGCTTCATCagcaaacaaaccataaatacaTACAATAACTGCTAAATATTTTTGTGTAAAAGAAATAAAATACGAGTGAGCGACTGTACAGAACTAATGACAAACGACACAGGAATGTGTGGAATAAGTGGTGGATTGTTTGGTGTTGGTTGATTTTACAGCTTAAATATAACTGGGAATTATTGTGTCCATGTGAATTATACACGAATTGGAATACATTTAGCCAGATAATCACATGGATATTTAAATACCCTTTTTCGTCAAATCAACTGAATAGAAAtgtaacaaacaacaaataaaatGTGCAGAGGCCTATGTAACCTTCAACATCAGCAAACAAGAAAATATGTATCTTTAGGGGCCAGCTTCCCTGATACAGAGCAACCCCAGTCCTAGACTAAAAAGCATAGTTGAAAGGGCTCTTAAGTCCAAGGGTCGGCTTTCTATGTCCAGGAAACTGGTCCTAGGTCAAGTTCTTTAGAATTTTCAAACGACTATTGACAGTGTTTTTCCCCTTGATATCTGTAGGCCCTCCCGTCCCAGCAGCGTCTCCAGGGACCCCGTTGTTTCATTAGTGTGGTTCACTGTGCTCAGTTGAACCAGTATATGGCTTCTATACAGCAGCCAATGCCAGGTCGTCAGAGCTGAGATTCACTAGTAGTTTAATTCATTCACCAGGATGATTATTTCACTTTATCCTGAGGTCATTTTCTCTAAATCAATACTAATGAGATTTAACCATAAAGGCAGTGTTACAGTTTACAAAGTTTCAGCTTCCATTTTCTCTGAAAATATAAGAAAATACTATGTACAGGTGCTCAAGTGTACAATTCAATGCACTTTTGGGGAGTACGTTGATTACAGCATAAAAAACATGCAGATTTTAGTTTAGACCGCTTCATAAACTCCACCCTGAAATAATGGTGGTTTGAGTGTTTGGTTTTCCCAATTAAATCAATAACTGTGTAGCGGTACATCAAGTACCTTAAATGCTCAATGGCTCTTAAAATGGGATTGTGTATGTTTGAGAGTTACATTTCCCAAATATTGAATATCTCCTAAAACTAGGCACAATGTTGCTTGGTGTAGTATCCACTACATGTCCTGTTACCTTTCCATGGCCACAGCGATGTGACTCTTGACACTCGTTTAGTCGGGATGGGTTTCCAGAATCTGTCATCTGGGTGTTTATTTTCTCCAGATTTGTCAGGTGGTGTCTGTCGTTGCCTTGGGTCTGGTTCAGTGGGGAGGAACATTAAAAGTGTTGCGGATAGAAATGCATTGCATAGAACTGTCACAATTGTGCAATTCCCAAATACCATTATTTAAAGTTGTATATATTCTATATAGAATACATTTCTACCTGCAACGTTTGGAGCTAGAACTCTACTAAACAGGGCCCTTGTAACGGTGCAGGGAAGGGAGAGTCAGTTGGTCGAGGGATTATAGTAGCCCTCCTGTCTGTTCCACTCCTCCTCTACAAGTGAGTGTCCTCCTCGTCTGGCACGTCCTCTTTGAGCAGGCTGTCGATGGGGACAATCCAGCTGTCGTTGAACTCTCCGTACAGGGCCACCTTCTTCTCCTGCATCTCCGGCTGCACCTCCATCACCTCCAATGTGGGGTTGTCATGGTAACCATCCTCCACCGTCTGCAGCTCCTCCGTCAGGTGTTGCTGTTGAGAGAAGATAAGGGGAGATTTCGGTAAACAGGACAGGATGCTCCAAACCCAGCCTATGGGCTTGCCCCAGCGCACCGTGAACAATCCTGGACCACGTTCTCAGGCTGGGACCCTAGGGATTTAGAACAATGGCTTCTATGGGATCCCCGCCCTCAACCCACACACACGTACCGCCATAGCATTAGGACTACTACTTGCTTCCTCATACTCAGTCCCGCACATACGTGGGTGCACAGTCACACACTAAAAACACTCATACCTCTCTTATCTCACATGTTCATATATCAGGCCGTATACCTACATTACTAACGCACTGCGCTATAAATAACATGCATTTCAAAGGCTACATATGCTGTCAATTCATATAGGGCTGCATAATTCATCTAATTCACATCAAAATCGCAATATTGTCGTGCAATATTCATGTCGCAAGAAGATTCATATCGCATGCAATATTTTGAAACGCCTCTCAGCCATGTGTAGCGTCTGTTTTTATAGTTGTGGCTGCGTCCCACACGCTCAAGCCCAGCCCCATCAAGCAGCGCAGCTGCTCCTCTTTAGATTCACTATAAGTTTGCATGCTGTTCTGTTAGGTCAAATGCAGTCAACAGATTGTTCCAGACAACGATGAcactttttttttgctttttaaTATAAATCATTCTGTTTCTaggattccaacagttcacccaagtgttttcatctac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1494670 True 2451 lncRNA 0.43 2 56826473 56832210

Neighbor

gene id symbol gene type direction distance location
LOC110490365 LOC106576224 coding downstream 23696 56795350 ~ 56802777 (-)
LOC118938817 NA coding downstream 43957 56779656 ~ 56782516 (-)
LOC110490368 LOC106576221 coding downstream 49938 56711067 ~ 56776535 (-)
LOC110490371 LOC106609349 coding upstream 115 56832325 ~ 56875598 (-)
LOC110490376 LOC106576228 coding upstream 197934 57030144 ~ 57037055 (-)
LOC110490760 NA coding upstream 205304 57037514 ~ 57039997 (-)
LOC110490378 gdib coding upstream 207578 57039788 ~ 57050771 (-)
LOC110490379 ankrd16 coding upstream 220761 57052971 ~ 57058823 (-)
G1310167 NA non-coding downstream 19779 56806019 ~ 56806694 (-)
G1310108 NA non-coding downstream 118396 56706784 ~ 56708077 (-)
G1310105 NA non-coding downstream 121562 56704698 ~ 56704911 (-)
G1310054 NA non-coding downstream 197538 56620934 ~ 56628935 (-)
G1310046 NA non-coding downstream 227022 56597418 ~ 56599451 (-)
G1310239 NA non-coding upstream 99986 56932196 ~ 56932643 (-)
G1310241 NA non-coding upstream 102330 56934540 ~ 56934747 (-)
G1310242 NA non-coding upstream 104999 56937209 ~ 56937443 (-)
G1310243 NA non-coding upstream 105973 56938183 ~ 56938436 (-)
G1310244 NA non-coding upstream 106781 56938991 ~ 56939383 (-)
G1309187 NA other downstream 771409 56054491 ~ 56055064 (-)
G1308906 NA other downstream 1078720 55746285 ~ 55747753 (-)
G1308831 NA other downstream 1269899 55556232 ~ 55556574 (-)
LOC110490757 LOC106576193 other downstream 1407228 55417169 ~ 55438953 (-)
LOC110490337 LOC106609287 other downstream 1674362 55148760 ~ 55155353 (-)
G1310261 LOC106609352 other upstream 139531 56971741 ~ 56973518 (-)
LOC110490385 LOC106576235 other upstream 293604 57125783 ~ 57143499 (-)
LOC110490387 LOC106609365 other upstream 410470 57231181 ~ 57247843 (-)
G1310744 NA other upstream 546629 57295439 ~ 57441427 (-)
G1311818 NA other upstream 1316776 58148986 ~ 58149397 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G85834 NA non-coding NC_048565.1 CM023219.2 76275375 ~ 76275621 (-)
mexican tetra (Astyanax mexicanus) G70098 NA non-coding NC_035903.1 CM008306.1 40563872 ~ 40567736 (-)