G1310805 (LOC106576254)


Basic Information

Item Value
gene id G1310805
gene name LOC106576254
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 57461779 ~ 57463513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1495386
gtactgtatagaGTTTATATCTTGACCAGAAACCAAGCATAATCAATCATTTAAACGTTAGTGCAGGGAAATGAAACACAATCATTCGATGCATGTATCTTTAATCGTGAATTTCTTTCAAGATTATCAAGAGACAACAACGGATAAAATAATCTGATTGTAGGAAGAATCAGTTATAGATTCAGCATGACCTTCTGGTACAGTATTGGTATTTCCAGCGACGATCTTCATAATTGTTGTCGTGGTAGCTTTCAGCTGCAATCAGGTAGGAATTTGGTGGGGCATTAAAAGTGAAGGCCTCATCAAACCAGTTTACGTAGTTGGTCCACTGGCAGGAATCAGTACAGAAGTTGCTGGCTCCACAGCAGGTGAACTTCCATCTTCTGTCCTCATGCTTGTTGTCATGATAGCTGTTCATCCCTGTGATGACCTGGTGGCTTGGGCATTGGTAGTTGAAAGGTTTGTCGAGGTCATTTACGTAGGAAGATGTGAAGCAGTTAGTTGCTGAGTCAAACGTGGCTTTGCACCCAAAGTCCCACATACGGTCTTCATATATGTTGTGATGCTCACTTTTCCGTTGACCAACACACCAGCAAGAAGCAGAATAAAGACGTTGGCTCTCTTCATGGCTTTTG

Function

NR:

description
LOW QUALITY PROTEIN: hemagglutinin/amebocyte aggregation factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1495386 True 635 lncRNA 0.42 4 57461779 57463513

Neighbor

gene id symbol gene type direction distance location
slc26a4 LOC106576239 coding downstream 154628 57293141 ~ 57307151 (-)
LOC118936373 LOC106576240 coding downstream 176348 57270302 ~ 57285431 (-)
LOC110490387 LOC106609365 coding downstream 213957 57231181 ~ 57247843 (-)
LOC110490385 LOC106576235 coding downstream 318284 57125783 ~ 57143499 (-)
LOC110490383 LOC106576231 coding downstream 359835 57096165 ~ 57101944 (-)
LOC110490395 rpap3 coding upstream 24221 57487734 ~ 57494139 (-)
LOC110490399 LOC106576247 coding upstream 69773 57533286 ~ 57556011 (-)
LOC110490402 LOC106576259 coding upstream 201204 57664717 ~ 57719477 (-)
LOC110490404 etv6 coding upstream 256609 57720122 ~ 57737342 (-)
LOC110490408 NA coding upstream 350091 57813604 ~ 57815952 (-)
G1310744 NA non-coding downstream 62588 57295439 ~ 57441427 (-)
G1310739 NA non-coding downstream 168954 57292471 ~ 57292825 (-)
G1310738 NA non-coding downstream 170336 57289874 ~ 57291443 (-)
G1310740 NA non-coding downstream 172165 57288494 ~ 57289614 (-)
G1310741 NA non-coding downstream 173660 57287780 ~ 57288119 (-)
G1310848 LOC106576255 non-coding upstream 3389 57466902 ~ 57467156 (-)
G1310849 NA non-coding upstream 4225 57467738 ~ 57469681 (-)
G1310850 NA non-coding upstream 6265 57469778 ~ 57470637 (-)
G1310851 NA non-coding upstream 10624 57474137 ~ 57474508 (-)
G1310861 NA non-coding upstream 19994 57483507 ~ 57484018 (-)
G1310261 LOC106609352 other downstream 488261 56971741 ~ 56973518 (-)
G1309187 NA other downstream 1406715 56054491 ~ 56055064 (-)
G1311818 NA other upstream 685473 58148986 ~ 58149397 (-)
G1311869 tsn9 other upstream 917511 58381024 ~ 58386002 (-)
LOC110490436 LOC106576293 other upstream 925822 58389335 ~ 58391339 (-)
G1311920 NA other upstream 934047 58397560 ~ 58410709 (-)
G1311995 NA other upstream 1056444 58519957 ~ 58520579 (-)

Expression


Co-expression Network