G1313177 (LOC106609379)


Basic Information

Item Value
gene id G1313177
gene name LOC106609379
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 60000656 ~ 60001871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1498115
CTTGAAGAAGCATCCATTGGCCTCAAACTGCTGTCGCAGCATGAACTTGCCCCTGTACTCTATGATGAGGGAGTCTGGAGCCAAATCCCTCACTGCCTTCAGGATCTTCTTGTTCTTCTGAACCTGGctctggagaggggagagaaaacaGGACATGAGGAAAGAGGCTGACTGATATTTGCAGAGGCAATGTGTGTATACAAACTGTGTGTATGCTGCCTGCTCAGGCACTTTGAGGACACATGTTTGTAGGTCACTGTTTCGGTTCCAGCTACCTCCACGGGCGGTTTGaaggtggctgtgtgtgtgttgtaggccAGGGTCTTGCCGTCGCCGGCCTCCTTGACGCGGAGCAGGATCTGGACGTCCTCGCTGTACTGGTTGCTGCCGGCATCTTCGTAGGCCTCCATCCAAGCCTTCATCTTGTTCTCCCACAGAGACGGGTGCTCCCCGGGCTCCATTTCTGGAGCGCCACCCTTCACTCTGGAGGACTTCCTGGAGCCCTCACGGAACGCCTGTTAGACAACAGACAGCATAAAACAACAAGGTTTACCACCAGTTTAAGAGACGTTACAGAGTACATAACAAATTGTTGAAATAAACATGCCAAAACTCTTTGGGGGGTGAGTTGCTCCACATACAAATACATGTCAAGCTCAGAGGTACAGTTGGGGTCAAGATAAGAAACTATTGAGTGTCAATAGGTTTGAATGGAAGTTGAAACACAGACCTTCTTGGCTCGGGCTGACGTGGCGACGGGCTCCTTGTCTCCGCTCCTCTTGCGTTTCTTGTCGGCCTGCTTGTTGCCCGCCAGGCGGCCGGTGGTGAGTGTGATGCTGGTGGGCGTGTGCTGGAAGGCCGTGTACAACTCCAGCGGCACCTCGTCCCCACTCTCTGTGGCACTGGTGTCCCCGTCTGCAGAGATACATACCGGTATGCCTTAATAAAGCATTGGTAATAAAGGTTTATTTGGGCATCTTCTACAGAGGGTCCATCCAAAGCAAAGTTTTCCTGGTTCTAACCTATTTAGACAACTTATTTCTCAAAGGTAAAAACAAGATTTTCCATAGCAGTCTGCCATTCCAAATGTCTGCATTGCTGTATTACTCGATGTGACCAGCAGGTGTCAGCTTGCAGCCGAATCAGAATTGTGGTCCTGGGGCccctacacacctgattcaaataaccaactcagcATCAAACTGATTATTTGAat
>TU1498117
CTTGAAGAAGCATCCATTGGCCTCAAACTGCTGTCGCAGCATGAACTTGCCCCTGTACTCTATGATGAGGGAGTCTGGAGCCAAATCCCTCACTGCCTTCAGGATCTTCTTGTTCTTCTGAACCTGGctctggagaggggagagaaaacaGGACATGAGGAAAGAGGCTGACTGATATTTGCAGAGGCAATGTGTGTATACAAACTGTGTGTATGCTGCCTGCTCAGGCACTTTGAGGACACATGTTTGTAGGTCACTGTTTCGGTTCCAGCTACCTCCACGGGCGGTTTGaaggtggctgtgtgtgtgttgtaggccAGGGTCTTGCCGTCGCCGGCCTCCTTGACGCGGAGCAGGATCTGGACGTCCTCGCTGTACTGGTTGCTGCCGGCATCTTCGTAGGCCTCCATCCAAGCCTTCATCTTGTTCTCCCACAGAGACGGGTGCTCCCCGGGCTCCATTTCTGGAGCGCCACCCTTCACTCTGGAGGACTTCCTGGAGCCCTCACGGAACG
>TU1498114
TCCACGGGCGGTTTGaaggtggctgtgtgtgtgttgtaggccAGGGTCTTGCCGTCGCCGGCCTCCTTGACGCGGAGCAGGATCTGGACGTCCTCGCTGTACTGGTTGCTGCCGGCATCTTCGTAGGCCTCCATCCAAGCCTTCATCTTGTTCTCCCACAGAGACGGGTGCTCCCCGGGCTCCATTTCTGGAGCGCCACCCTTCACTCTGGAGGACTTCCTGGAGCCCTCACGGAACG
>TU1498116
TCCACGGGCGGTTTGaaggtggctgtgtgtgtgttgtaggccAGGGTCTTGCCGTCGCCGGCCTCCTTGACGCGGAGCAGGATCTGGACGTCCTCGCTGTACTGGTTGCTGCCGGCATCTTCGTAGGCCTCCATCCAAGCCTTCATCTTGTTCTCCCACAGAGACGGGTGCTCCCCGGGCTCCATTTCTGGAGCGCCACCCTTCACTCTGGAGGACTTCCTGGAGCCCTCACGGAACGCCTGTTAGACAACAGACAGCATAAAACAACAAGGTTTACCACCAGTTTAAGAGACGTTACAGAGTACATAACAAATTGTTGAAATAAACATGCCAAAACTCTTTGGGGGGTGAGTTGCTCCACATACAAATACATGTCAAGCTCAGAGGTACAGTTGGGGTCAAGATAAGAAACTATTGAGTGTCAATAGGTTTGAATGGAAGTTGAAACACAGACCTTCTTGGCTCGGGCTGACGTGGCGACGGGCTCCTTGTCTCCGCTCCTCTTGCGTTTCTTGTCGGCCTGCTTGTTGCCCGCCAGGCGGCCGGTGGTGAGTGTGATGCTGGTGGGCGTGTGCTGGAAGGCCGTGTACAACTCCAGCGGCACCTCGTCCCCACTCTCTGTGGCACTGGTGTCCCCGTCTGCAGAGATACATACCGGTATGCCTTAATAAAGCATTGGTAATAAAGGTTTATTTGGGCATCTTCTACAGAGGGTCCATCCAAAGCAAAGTTTTCCTGGTTCTAACCTATTTAGACAACTTATTTCTCAAAGGTAAAAACAAGATTTTCCATAGCAGTCTGCCATTCCAAATGTCTGCATTGCTGTATTACTCGATGTGACCAGCAGGTGTCAGCTTGCAGCCGAATCAGAATTGTGGTCCTGGGGCccctacacacctgattcaaataaccaactcagcATCAAACTGATTATTTGAat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1498115 False 1216 TUCP 0.50 1 60000656 60001871
TU1498117 False 514 lncRNA 0.55 1 60000656 60001169
TU1498114 False 238 lncRNA 0.62 1 60000932 60001169
TU1498116 True 940 lncRNA 0.51 1 60000932 60001871

Neighbor

gene id symbol gene type direction distance location
lhfpl3 lhfpl3 coding upstream 25981 59935626 ~ 59977759 (+)
LOC110490476 LOC106576353 coding upstream 78378 59917322 ~ 59922278 (+)
LOC110490472 cl031 coding upstream 123914 59874840 ~ 59876742 (+)
LOC110490468 acss3 coding upstream 450979 59518022 ~ 59549677 (+)
LOC110490466 LOC106576326 coding upstream 531418 59466597 ~ 59469238 (+)
LOC110490480 LOC106576359 coding downstream 23192 60025063 ~ 60026611 (+)
LOC110490772 LOC104968060 coding downstream 50124 60051995 ~ 60059547 (+)
LOC110490485 LOC106609495 coding downstream 505508 60507379 ~ 60520609 (+)
LOC110490488 LOC106576423 coding downstream 841953 60843824 ~ 60926356 (+)
LOC110490491 LOC106576442 coding downstream 1003766 61005637 ~ 61009062 (+)
G1313205 LOC106576014 non-coding upstream 4424 59995913 ~ 59996232 (+)
G1313203 NA non-coding upstream 13384 59985833 ~ 59987272 (+)
G1313202 LOC106609379 non-coding upstream 16445 59983863 ~ 59984211 (+)
G1313201 LOC106609379 non-coding upstream 18023 59981099 ~ 59982633 (+)
G1313207 LOC106576014 non-coding downstream 791 60002662 ~ 60002881 (+)
G1313208 NA non-coding downstream 1613 60003484 ~ 60003718 (+)
G1313209 NA non-coding downstream 3174 60005045 ~ 60006010 (+)
G1313212 NA non-coding downstream 5842 60007713 ~ 60007957 (+)
G1313214 NA non-coding downstream 8119 60009990 ~ 60010237 (+)
G1313204 LOC106576014 other upstream 15748 59984329 ~ 59984908 (+)
G1313163 NA other upstream 87788 59911208 ~ 59912868 (+)
G1313161 NA other upstream 91370 59908570 ~ 59909286 (+)
G1313160 NA other upstream 93364 59906979 ~ 59907292 (+)
G1313256 NA other downstream 96916 60098787 ~ 60100927 (+)
G1315004 NA other downstream 1504313 61506184 ~ 61506590 (+)
G1315081 NA other downstream 1557709 61559580 ~ 61559958 (+)
G1315251 NA other downstream 1833575 61835446 ~ 61836074 (+)

Expression

G1313177(LOC106609379) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 4.
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G1313177(LOC106609379) Expression in each Bioproject

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G1313177(LOC106609379) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network