G1313251


Basic Information

Item Value
gene id G1313251
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 60080922 ~ 60083731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1498206
aacactactacactgtacatcatgtatagtaccaacacgactactacactgtacatcatgtatagtaccaacactactactacacatcatgtatagtaccaacactactactacactgtacatcatgtaaagTACCAACAcgactactacactgtacatcatgtatagtaccaacactactactacacatcatgtatagtaccaacacgactactacactgtacatcatgtatagtaccaacactactactacacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacacgactactacactgtacatcatgtatagtaccaacactactactacacatcatgtatagtaccaacactactactacactgtacatcatgtaaagTACCAAcgctactactacactgtacatcatgtatagtaccaacactactactacactgtacatcacgTATAGTACCAACAcgactactacactgtacatcatgtatagtaccaacactactactacacatcatgtatagtactaacactactactacactgtacatcatgtatagtaccaacgctactactacactgtacatcatgtatagtaccaacactactactacacatcatgtatagtaccaacactactaccacacatcatgtatagtaccaacactactactacacatcatgtatagtactaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagcaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagctccaacactactactacacatcatgtatagtaccaacactactactacacatcatgtatagtaccaacactactactacactgtacatcatgtatagcaccaacactactactacacatcatgtatagcaccaacactactactacactgtacatcatgtatagtaccaacac
>TU1498207
aacactactacactgtacatcatgtatagtaccaacactactacactgtacatcatgtatagcaccaacactactacactgtacatcatgtatagtaccaacactactactacacatcatgtatagtaccaacactactaccacacatcatgtatagtaccaacactactactacacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagcaccaacactactactacacatcatgtatagcaccaacactactactacactgtacatcatgtatagtaccaacactactacta
>TU1498209
aacactactacactgtacatcatgtatagtaccaacactactacactgtacatcatgtatagcaccaacactactacactgtacatcatgtatagtaccaacactactacactgtacatcatgtatagcaccaacactactacactgtacatcatgtatagtaccaacactactactaccacacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagtaccaacactactactacactgtacatcatgtatagcaccaacactactactacacatcatgtatagcaccaacactactactacactgtacatcatgtatagtaccaacactactacta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1498206 False 1243 lncRNA 0.37 2 60080922 60082740
TU1498207 False 483 lncRNA 0.37 4 60080922 60083731
TU1498209 True 490 lncRNA 0.37 3 60080922 60083731
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110490772 LOC104968060 coding upstream 21918 60051995 ~ 60059547 (+)
LOC110490480 LOC106576359 coding upstream 54537 60025063 ~ 60026611 (+)
lhfpl3 lhfpl3 coding upstream 106247 59935626 ~ 59977759 (+)
LOC110490476 LOC106576353 coding upstream 158644 59917322 ~ 59922278 (+)
LOC110490472 cl031 coding upstream 204180 59874840 ~ 59876742 (+)
LOC110490485 LOC106609495 coding downstream 423648 60507379 ~ 60520609 (+)
LOC110490488 LOC106576423 coding downstream 760093 60843824 ~ 60926356 (+)
LOC110490491 LOC106576442 coding downstream 921906 61005637 ~ 61009062 (+)
LOC110490492 LOC106576422 coding downstream 929941 61013672 ~ 61016317 (+)
LOC110490775 LOC106576441 coding downstream 932689 61016420 ~ 61023858 (+)
G1313220 NA non-coding upstream 58270 60022016 ~ 60022652 (+)
G1313221 NA non-coding upstream 59436 60021176 ~ 60021486 (+)
G1313218 NA non-coding upstream 66361 60014358 ~ 60014561 (+)
G1313217 NA non-coding upstream 67774 60012819 ~ 60013148 (+)
G1313252 NA non-coding downstream 2041 60085772 ~ 60093299 (+)
G1313424 LOC106609492 non-coding downstream 340715 60424446 ~ 60425029 (+)
G1313429 NA non-coding downstream 350746 60434477 ~ 60434702 (+)
G1313454 NA non-coding downstream 382780 60466511 ~ 60466841 (+)
G1313455 NA non-coding downstream 384024 60467755 ~ 60467966 (+)
G1313177 LOC106609379 other upstream 79051 60000656 ~ 60001871 (+)
G1313204 LOC106576014 other upstream 96014 59984329 ~ 59984908 (+)
G1313163 NA other upstream 168054 59911208 ~ 59912868 (+)
G1313256 NA other downstream 15056 60098787 ~ 60100927 (+)
G1315004 NA other downstream 1422453 61506184 ~ 61506590 (+)
G1315081 NA other downstream 1475849 61559580 ~ 61559958 (+)
G1315251 NA other downstream 1751715 61835446 ~ 61836074 (+)
G1315291 NA other downstream 1803333 61887064 ~ 61912414 (+)

Expression

G1313251 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G1313251 Expression in each Bioproject

Bar chart with 8 bars.
G1313251 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network