G1314961


Basic Information

Item Value
gene id G1314961
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61406881 ~ 61407809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1500158
CCCTGTGGGTggtttgctctctccctctctgttttgtTCATACTGGGAAGGTTTTACACTCCTGTGTAACTCTGTCATGTCACACTATTTCGTGTACTATTCAATCCCAACTTGAGATATGCAAATATGAAATGACACATTTCCTGTTGATATCAATGAATTATTAGCGCTTGAGTAATGAGTGCGTCATATCTCAATGATTCTACCTTCTGTATGTGTAGAGTAGGCATATTTTATCTGTAGCACAAAAAAATGAGCAGTACTGTTTTGCAGTGATGTAAAGTTCTACTTTagtagttttggggggtatctgtactttactatttatatttttgactactttcaCTTTATACttaatacattttccctgaaacccaaacgtacttgttacattttgaatgtttagcagaacaggaaaatggtccaattcacgcacttatcaagagaacatccctggtcatccttctgcctctggcggactcactaaacacacatgctttgtttgtaaatgatgtctgagt
>TU1500153
CCCTGTGGGTggtttgctctctccctctctgttttgtTCATACTGGGAAGGTTTTACACTCCTGTGTAACTCTGTCATGTCACACTATTTCGTGTACTATTCAATCCCAACTTGAGATATGCAAATATGAAATGACACATTTCCTGTTGATATCAATGAATTATTAGCGCTTGAGTAATGAGTGCGTCATATCTCAATGATTCTACCTTCTGTATGTGTAGAGTAGGCATATTTTATCTGTAGCACAAAAAAATGAGCAGTACTGTTTTGCAGTGATGTAAAGTTCTACTTTagtagttttggggggtatctgtactttactatttatatttttgactactttcaCTTTATACttaatacattttccctgaaacccaaacgtacttgttacattttgaatgtttagcagaacaggaaaatggtccaattcacgcacttatcaagagaacatccctg
>TU1500163
TGTGCTTTAGGAAGATGCGGACGCCTgcgagcggtcgggtaggctgtttggagtgtttgtcCGATTGGATAAAAAAGGTAtgtccccccacttctaaaaccaaagttgcgcccctgaaaATAGCTACCATTAAATTTCCATTCTATTAAAGCACTACAATAGAGTGAACCGAAAACACTTCCATATATCCAGTGCATTCCATATCATAGAacactccccctttctctcttttca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1500158 False 521 lncRNA 0.37 1 61406881 61407401
TU1500153 False 456 lncRNA 0.36 1 61406946 61407401
TU1500163 True 234 lncRNA 0.44 1 61407576 61407809

Neighbor

gene id symbol gene type direction distance location
LOC110490512 LOC106609518 coding downstream 17834 61358996 ~ 61389047 (-)
LOC110490511 s38a2 coding downstream 80377 61314934 ~ 61326504 (-)
LOC110490507 LOC106576413 coding downstream 157936 61217158 ~ 61248945 (-)
LOC110490502 LOC106609510 coding downstream 196927 61199185 ~ 61209954 (-)
LOC110490506 med21 coding downstream 212465 61188370 ~ 61194701 (-)
LOC110490513 LOC106576407 coding upstream 2099 61409908 ~ 61415090 (-)
LOC100653449 LOC106576405 coding upstream 18902 61426711 ~ 61465987 (-)
LOC110490514 LOC106576438 coding upstream 67767 61475576 ~ 61477946 (-)
LOC110490515 LOC106576438 coding upstream 75292 61483101 ~ 61485762 (-)
LOC110490517 NA coding upstream 113943 61521752 ~ 61524082 (-)
G1314876 NA non-coding downstream 116665 61226563 ~ 61290216 (-)
G1314798 LOC106576442 non-coding downstream 312244 61005663 ~ 61094637 (-)
G1314799 NA non-coding downstream 316442 61087935 ~ 61090439 (-)
G1314792 NA non-coding downstream 412561 60989032 ~ 60994320 (-)
G1314967 NA non-coding upstream 14002 61421811 ~ 61422016 (-)
G1314969 NA non-coding upstream 17284 61425093 ~ 61426132 (-)
G1314982 NA non-coding upstream 49096 61456905 ~ 61457119 (-)
G1314987 NA non-coding upstream 60709 61468518 ~ 61468718 (-)
G1314304 NA other downstream 634393 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 1982574 59420247 ~ 59424344 (-)
G1312023 NA other downstream 2715499 58634282 ~ 58691382 (-)
LOC110490770 NA other downstream 2778051 58627298 ~ 58684968 (-)
G1311995 NA other downstream 2886302 58519957 ~ 58520579 (-)
G1315398 LOC106609523 other upstream 202611 61610420 ~ 61612116 (-)
G1315509 NA other upstream 426817 61834626 ~ 61836573 (-)
G1315519 NA other upstream 457221 61865030 ~ 61891421 (-)
G1315518 NA other upstream 484862 61874995 ~ 62006707 (-)
G1316051 LOC106609550 other upstream 634961 62042770 ~ 62056023 (-)

Expression


Co-expression Network