G1315000


Basic Information

Item Value
gene id G1315000
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61503142 ~ 61503650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1500218
cATAcaaataattaaatcataacttgattacaaattacgtcataaaggaaactGTCACTAGCGAGCAGAACAGATATAACAGCTTGTttcacaaaagaaaaggggctgggtttgagtgaaggagcgggaagactgaggaacaaaggcgaagctgtgctatcgcaaatacagtatcttatgcattctaaattaccgcccatttggaaaaggaaaatgcaataaatatttactctgagctgcgcttcggtaggttggtggtagatggaaggccgtgttgcccaaccgagtcctttgaagaatgtctctggttgtcaattggatacgttgtagtaacgttgttgtgtgatagACAGGATattctgtctgttccttcctaaccctcgtttgcagctgctgttgctaactcaacggctaggaggtatcacttctgtagtgaataagagttcaaagttcataccattcgcaaccaaagctcacgctgatgttggctttgttctgtagttattatc

Function

NR:

description
uncharacterized protein LOC110518344

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1500218 True 509 lncRNA 0.42 1 61503142 61503650

Neighbor

gene id symbol gene type direction distance location
LOC110490515 LOC106576438 coding downstream 17380 61483101 ~ 61485762 (-)
LOC110490514 LOC106576438 coding downstream 25196 61475576 ~ 61477946 (-)
LOC100653449 LOC106576405 coding downstream 37155 61426711 ~ 61465987 (-)
LOC110490513 LOC106576407 coding downstream 88052 61409908 ~ 61415090 (-)
LOC110490512 LOC106609518 coding downstream 114095 61358996 ~ 61389047 (-)
LOC110490517 NA coding upstream 18102 61521752 ~ 61524082 (-)
LOC110490518 NA coding upstream 35743 61539393 ~ 61557927 (-)
LOC110490529 LOC106576403 coding upstream 110287 61613937 ~ 61646356 (-)
LOC110490528 LOC106576401 coding upstream 167993 61671643 ~ 61676140 (-)
LOC110490526 pkp2 coding upstream 173901 61677551 ~ 61685779 (-)
G1314993 NA non-coding downstream 9986 61492789 ~ 61493156 (-)
G1314981 LOC106576438 non-coding downstream 17465 61474924 ~ 61485677 (-)
G1314987 NA non-coding downstream 34424 61468518 ~ 61468718 (-)
G1314982 NA non-coding downstream 46023 61456905 ~ 61457119 (-)
G1315024 NA non-coding upstream 20554 61524204 ~ 61524452 (-)
G1315025 NA non-coding upstream 20816 61524466 ~ 61524685 (-)
G1315032 NA non-coding upstream 23520 61527170 ~ 61527699 (-)
G1315036 NA non-coding upstream 25984 61529634 ~ 61530472 (-)
G1314304 NA other downstream 730654 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 2078835 59420247 ~ 59424344 (-)
G1312023 NA other downstream 2811760 58634282 ~ 58691382 (-)
LOC110490770 NA other downstream 2874312 58627298 ~ 58684968 (-)
G1311995 NA other downstream 2982563 58519957 ~ 58520579 (-)
G1315398 LOC106609523 other upstream 106770 61610420 ~ 61612116 (-)
G1315509 NA other upstream 330976 61834626 ~ 61836573 (-)
G1315519 NA other upstream 361380 61865030 ~ 61891421 (-)
G1315518 NA other upstream 389021 61874995 ~ 62006707 (-)
G1316051 LOC106609550 other upstream 539120 62042770 ~ 62056023 (-)

Expression


Co-expression Network