G1315509


Basic Information

Item Value
gene id G1315509
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61834626 ~ 61836573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1500820
AGTAAGTATTCAGATATATTTTATTTCAAAAGACAAGTTGAATATTTTtatgtatttgagtattttcaatgCATTGTATTCTCCCATGCATTTAACCCAGGTGTTTGAAAATAGTATTTAAAATAAGTGTTTGAAAATACACGTACTACTTACTACTATTCTAGAATTTGAACCCAGGTATGATTGTAATAAATAATCACTCAGTAATTGTCTGTGGTGACTCAATCATTTATAAATTAACTAATACTACAGCATGTGTAtgatatatgtatattattatgTACATGATGCTACATTTATTATCTGTCAAACGCTGTTTAAGTGTGGGAAAGGAATTACTCGGATGAGCAACATGAGACTATGTTTGAAAACTTGTAAGAAATAAACTCATTGGCTCTTTGTCAGACTATAGTGATTTTTACATTTGTGTTCGGTGTTTCTCCTTGAGCTCATTGTATTACAGGTCAtgtacaatgaacaaaaatataaactcaacaagtgttggtttcatgagcagaaataaaagatcccag
>TU1500823
gggctccatgcaagatctcaccctgtggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacggggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgattcagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcgactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacaccatgctttggagctgtttttctggaaagggaccaggatgactgatctgtgtagaggaaagaatgaatggggccatgtatcataaGATTTTGAGttaaaacctccttccatcagcaagggcattgaagatgaaacatagctgggtctttcagcatgacaatgatcccaaatacaccgcctgggcaacgaaggagtggcttcataagaagcatttcaaggtcctggagtggcctaaccagtctccagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctacatggcggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttattgaccaaatacttattttccaccataatttgcaaatagattcattaaaaatcctacaatgtgattttctggatttttttttctcattttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctcatctttttaagtgggagaacttgcacaattggtggctgactaaataagtAAGTAAGTATTCAGATATATTTTATTTCAAAAGACAAGTTGAATATTTTtatgtatttgagtattttcaatgCATTGTATTCTCCCATGCATTTAACCCAGGTGTTTGAAAATAGTATTTAAAATAAGTGTTTGAAAATACACGTACTACTTACTACTATTCTAGAATTTGAACCCAGGTATGATTGTAATAAATAATCACTCAGTAATTGTCTGTGGTGACTCAATCATTTATAAATTAACTAATACTACAGCATGTGTAtgatatatgtatattattatgTACATGATGCTACATTTATTATCTGTCAAACGCTGTTTAAGTGTGGGAAAGGAATTACTCGGATGAGCAACATGAGACTATGTTTGAAAACTTGTAAGAAATAAACTCATTGGCTCTTTGTCAGACTATAGTGATTTTTACATTTGTGTTCGGTGTTTCTCCTTGAGCTCATTGTATTACAGGTCAtgtacaatgaacaaaaatataaactcaacaagtgttggtttcatgagcagaaataaaagatcccag
>TU1500829
AGTAAGTATTCAGATATATTTTATTTCAAAAGACAAGTTGAATATTTTtatgtatttgagtattttcaatgCATTGTATTCTCCCATGCATTTAACCCAGGTGTTTGAAAATAGTATTTAAAATAAGTGTTTGAAAATACACGTACTACTTACTACTATTCTAGAATTTGAACCCAGGTATGATTGTAATAAATAATCACTCAGTAATTGTCTGTGGTGACTCAATCATTTATAAATTAACTAATACTACAGCATGTGTAtgatatatgtatattattatgTACATGATGCTACATTTATTATCTGTCAAACGCTGTTTAAGTGTGGGAAAGGAATTACTCGGATGAGCAACATGAGACTATGTTTGAAAACTTGTAAGAAATAAACTCATTGGCTCTTTGTCAGACTATAGTGATTTTTACATTTGTGTTCGGTGTTTCTCCTTGAGCTCATTGTATTACAGGTC
>TU1500825
AGTAAGTATTCAGATATATTTTATTTCAAAAGACAAGTTGAATATTTTtatgtatttgagtattttcaatgCATTGTATTCTCCCATGCATTTAACCCAGGTGTTTGAAAATAGTATTTAAAATAAGTGTTTGAAAATACACGTACTACTTACTACTATTCTAGAATTTGAACCCAGGTATGATTGTAATAAATAATCACTCAGTAATTGTCTGTGGTGACTCAATCATTTATAAATTAACTAATACTACAGCATGTGTAtgatatatgtatattattatgTACATGATGCTACATTTATTATCTGTCAAACGCTGTTTAAGTGTGGGAAAGGAATTACTCGGATGAGCAACATGAGACTATGTTTGAAAACTTGTAAGAAATAAACTCATTGGCTC
>TU1500821
AGTAAGTATTCAGATATATTTTATTTCAAAAGACAAGTTGAATATTTTtatgtatttgagtattttcaatgCATTGTATTCTCCCATGCATTTAACCCAGGTGTTTGAAAATAGTATTTAAAATAAGTGTTTGAAAATACACGTACTACTTACTACTATTCTAGAATTTGAACCCAGGTATGATTGTAATAAATAATCACTCAGTAATTGTCTGTGGTGACTCAATCATTTATAAATTAACTAATACTACAGCATGTGTAtgatatatgtatattattatgTACATGATGCTACATTTATTATCTGTCAAACGCTGTTTAAGTGTGGGAAAGGAATTACTCGGATGAGCAACATGAGA
>TU1500832
atgtccaggcccgtctgaagtttgctagagagcatttggatgattcagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcgactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacaccatgctttggagctgtttttctggaaagggaccaggatgactgatctgtgtagaggaaagaatgaatggggccatgtatcataaGATTTTGAGttaaaacctccttccatcagcaagggcattgaagatgaaacatagctgggtctttcagcatgacaatgatcccaaatacaccgcctgggcaacgaaggagtggcttcataagaagcatttcaaggtcctggagtggcctaaccagtctccagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctacatggcggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagg
>TU1500822
atgtccaggcccgtctgaagtttgctagagagcatttggatgattcagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcgactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacaccatgctttggagctgtttttctggaaagggaccaggatgactgatctgtgtagaggaaagaatgaatggggccatgtatcataaGATTTTGAGttaaaacctccttccatcagcaagggcattgaagatgaaacatagctgggtctttcagcatgacaatgatcccaaatacaccgcctgggcaacgaaggagtggcttcataagaagcatttcaaggtcctggagtggcctaaccagtctccagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggaga
>TU1500830
tggtggaaaataagtatttggtcacctacaaataagcaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctctgccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaaacacatgtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1500820 False 533 lncRNA 0.30 1 61834626 61835158
TU1500823 False 1581 TUCP 0.39 1 61834626 61836206
TU1500829 False 466 lncRNA 0.30 1 61834693 61835158
TU1500825 False 397 lncRNA 0.29 1 61834762 61835158
TU1500821 False 358 lncRNA 0.28 1 61834801 61835158
TU1500832 False 625 TUCP 0.45 1 61835378 61836002
TU1500822 False 528 lncRNA 0.45 1 61835475 61836002
TU1500830 True 223 lncRNA 0.42 1 61836351 61836573

Neighbor

gene id symbol gene type direction distance location
LOC110490520 zn12 coding downstream 11968 61804053 ~ 61822658 (-)
LOC110490525 LOC106576390 coding downstream 36129 61791810 ~ 61798497 (-)
LOC110490519 LOC106576394 coding downstream 75049 61744166 ~ 61759577 (-)
LOC110490527 LOC106609530 coding downstream 102679 61726204 ~ 61731947 (-)
LOC110490534 LOC106609529 coding downstream 111500 61719265 ~ 61723126 (-)
LOC110490521 LOC106576387 coding upstream 263 61836836 ~ 61842089 (-)
LOC110490536 NA coding upstream 13794 61850367 ~ 61861261 (-)
LOC110490558 NA coding upstream 222037 62058610 ~ 62062523 (-)
LOC110490561 LOC106576375 coding upstream 244398 62080971 ~ 62083812 (-)
LOC118938820 NA coding upstream 289965 62126538 ~ 62130465 (-)
G1315499 NA non-coding downstream 11262 61823142 ~ 61823364 (-)
G1315485 NA non-coding downstream 46069 61788355 ~ 61788557 (-)
G1315464 NA non-coding downstream 74350 61760075 ~ 61760276 (-)
G1315443 NA non-coding downstream 93567 61740528 ~ 61741059 (-)
G1315461 NA non-coding downstream 100873 61733338 ~ 61733753 (-)
G1315522 NA non-coding upstream 30815 61867388 ~ 61868018 (-)
G1315518 NA non-coding upstream 38422 61874995 ~ 62006707 (-)
G1315537 NA non-coding upstream 66878 61903451 ~ 61912714 (-)
G1315538 NA non-coding upstream 67576 61904149 ~ 61923641 (-)
G1315578 NA non-coding upstream 194560 62031133 ~ 62031489 (-)
G1315398 LOC106609523 other downstream 222510 61610420 ~ 61612116 (-)
G1314304 NA other downstream 1062138 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 2410319 59420247 ~ 59424344 (-)
G1312023 NA other downstream 3143244 58634282 ~ 58691382 (-)
LOC110490770 NA other downstream 3205796 58627298 ~ 58684968 (-)
G1315519 NA other upstream 28457 61865030 ~ 61891421 (-)
G1316051 LOC106609550 other upstream 206197 62042770 ~ 62056023 (-)
G1316178 NA other upstream 420525 62257098 ~ 62264093 (-)
G1316323 NA other upstream 697715 62534288 ~ 62537470 (-)

Expression


Co-expression Network