G1316509 (LOC106562530)


Basic Information

Item Value
gene id G1316509
gene name LOC106562530
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62944165 ~ 62944562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1502028
ggacagtgaggtaccggaggtccctccccccccgctggacatcgaggggtccccggcgtacacgatccgggccattctggactcaagacgccgggtgaggggcctgcagtacctcgtggactgggaggggtacggtccggaggagaggtgctgggtaccggtgggggacatcttggatccctccatgttgagggatttccatcgcctccatccggatcgccctgcgcctcgtcctccggggcgacctcgaggccggtgtcggcgcgctgcgggagccacgcgtcaggggggggtactgtcacgagtccgaccgagggtgtttccctttcccgggcaggtggcgctcggcggtcgtcgtcaccggcctattagctgccactgattgtttttccttcccc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106562530

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1502028 True 398 lncRNA 0.67 1 62944165 62944562

Neighbor

gene id symbol gene type direction distance location
LOC118936239 LOC100301653 coding downstream 11577 62905964 ~ 62932588 (-)
LOC110490577 lum coding downstream 53245 62886728 ~ 62890920 (-)
LOC110490576 LOC106576462 coding downstream 61562 62875090 ~ 62882603 (-)
LOC110490574 LOC106609040 coding downstream 71415 62850140 ~ 62872750 (-)
si:ch211-244b2.4 LOC106576452 coding downstream 102491 62821255 ~ 62841674 (-)
LOC110490858 LOC106609036 coding upstream 36609 62981171 ~ 62985780 (-)
LOC110490579 LOC106576460 coding upstream 186788 63131350 ~ 63136329 (-)
LOC110490580 LOC106576502 coding upstream 289212 63233774 ~ 63254079 (-)
LOC110490779 LOC106609576 coding upstream 311876 63256438 ~ 63282396 (-)
LOC110490581 NA coding upstream 341805 63286367 ~ 63288128 (-)
G1316504 NA non-coding downstream 4305 62939648 ~ 62939860 (-)
G1316483 NA non-coding downstream 61900 62881842 ~ 62882265 (-)
G1316442 NA non-coding downstream 152442 62791606 ~ 62791723 (-)
G1316436 NA non-coding downstream 161132 62782751 ~ 62783033 (-)
G1316435 NA non-coding downstream 161944 62781727 ~ 62782221 (-)
G1316511 NA non-coding upstream 6079 62950641 ~ 62950909 (-)
G1316515 NA non-coding upstream 8518 62953080 ~ 62953343 (-)
G1316516 NA non-coding upstream 9103 62953665 ~ 62953991 (-)
G1316815 NA non-coding upstream 129241 63073803 ~ 63074108 (-)
G1316816 NA non-coding upstream 131991 63076553 ~ 63076799 (-)
G1316451 NA other downstream 39483 62902859 ~ 62904682 (-)
LOC110490571 LOC106596632 other downstream 176666 62754956 ~ 62767499 (-)
G1316323 NA other downstream 406695 62534288 ~ 62537470 (-)
G1316178 NA other downstream 680135 62257098 ~ 62264093 (-)
G1316051 LOC106609550 other downstream 888142 62042770 ~ 62056023 (-)
G1316904 LOC106609576 other upstream 341945 63256527 ~ 63287904 (-)
G1318092 NA other upstream 1138475 64083037 ~ 64083888 (-)
G1318164 LOC106576481 other upstream 1271942 64216504 ~ 64227675 (-)
LOC110499867 LOC106576572 other upstream 1538265 64481916 ~ 64636502 (-)
G1318477 NA other upstream 2123715 65068277 ~ 65153287 (-)

Expression


Co-expression Network