G1318555


Basic Information

Item Value
gene id G1318555
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65229989 ~ 65233914 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1504538
ccttaacgtcggtagccctgccccctggtaaacagtgtacgATCGCTGAATGAttagttttaagtctaatactgcgggtaaagGAGtggccaatgactagggttttcaatttgtcagagctaatggtgggaagcttcagCGTCTCAGATCCCGTAACGGGAgaagtagagacaagagaaggctcggcctcagactccgactcgctgcttaatggggaaaaccggttgaaagtttctgtcggctgaatgagcgacaccggttgagcattcctacagcatttccctccagaagctatgagaaagttgtccggctgcgggaaCCGTGCGAGGGAAtttactaacgttactatctctACTTACTAGTGGCACAGACGcagtttcatcctttcctacactgaaattacccttgcctaacgattgcgtctgaaactgggcttgcagcacagctagcctcgccgtaaggcgatcgttctcctgtatattatgagtacagcgactgcaattagaaggcatcatgttaatgttactacttagcttcggctgttggaggtcctgacgaaccatgtacagataaagcgtccggagtgaaaaagttgaatgagaaaagttgagtgaggggaaaaacccaaaatataaacggtaattaaaaagtaaaaaacataaagttgtcaggtagtaaggtaaggttggcaacaaaacgcacagcaacacgtaaacaagtctgcaagttgtgaccgactaaacacctccctttgcagctggatcctggacttcctaacgatccgcacccaggtggtgagggtaggcaacaacacatcctccacgctgatcctcaacacgggggcccctcaggggtgcgtgctcagtcccctcctgtactccctgttcactcatgactgcatggtcaggcacgactccaactccatcattcattttgctgatgacacaaccattgtaggcctgatcaccgacaatgatgagacagcctataggcaggaggtcagagacctgaccgtgtgatgcaaggacaacaacctctccctcaatgtgatcaagacaaaggagatgattgtggactacaggaaaagaaagaccgagcacgcccccattctcatcgacggggctgtagtggagcaggttgaatgcttcaagttccttgtcgtccacatcaccaacaaatgaaaatggtccaagcacaccaagacagtcgtgaagagggcacgacaaaacctattccccctcaggagaatgaaaagatttgacatgggtcctcatatcctcaaaatgttttacagctgcaccatcgagagcatcctgaagggttgcatcactgcctggcatggcaactgctcggcctccgcaaggcactacagagggtagtacgacatccaggacttctataccaggcagtgtcagaggaaggccctaaaaattgtcagactccagccaccctagtcatagactgttctctctgctcccgcacggcaagcggtaccggagcgccaagtctaggtccaagaggcttctaaaacagcttctacccccaagccagaagactcctgaacagctaatcaaatggctacccaggcttttgcattgcccctcccccccacgctgctgctactctctgtcgtTATCTATgtatagccactttaataactctacctccatgtacataattaccacaattacctcgacacccgtgaccccgcacattgacacattgactctgtaccggtaccccctgtatatagccccactattgatatttactgctgctctttaattatttgttgttattatctcttactttttttgtatttGaaaagtaactgaatgcctcgatgcctttgatgatcttcatcagatgacactcataggacatcatgttacacaatacatgtatgttttgttcgataatgtacatatttatatccaaaaatctcagtttacattggcgccttacgtgcagtaatgttttgattccaaaacatcgggtgattttgcagaaatactcataataaacattgataaaagatacaagtgttattcacagaattaaagatagacttctccttaatgcaaccgctgtgtcagatattttttttttattaacggaaaaagcataatctgagaacggcgctcagaacccaaaacagccagaggaatatccaccattttggaatcaacaaagttagaaacaacaccataaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1504538 True 2212 lncRNA 0.46 3 65229989 65233914

Neighbor

gene id symbol gene type direction distance location
LOC118938827 LOC106576471 coding downstream 171346 65021405 ~ 65058643 (-)
LOC118938826 NA coding downstream 215578 64995972 ~ 65014411 (-)
LOC110510812 NA coding downstream 229010 64997957 ~ 65000979 (-)
LOC110511498 NA coding downstream 244740 64960178 ~ 64998613 (-)
LOC110517393 LOC106576623 coding upstream 35076 65268990 ~ 65303134 (-)
LOC110512490 LOC106592130 coding upstream 644096 65878010 ~ 65892365 (-)
LOC110511373 LOC106592131 coding upstream 658534 65892448 ~ 65898819 (-)
LOC110511371 LOC106597280 coding upstream 667828 65901742 ~ 65979435 (-)
LOC110499707 LOC106609801 coding upstream 747727 65981641 ~ 65986435 (-)
G1318548 NA non-coding downstream 9126 65220441 ~ 65220863 (-)
G1318529 NA non-coding downstream 69347 65160011 ~ 65160642 (-)
G1318477 NA non-coding downstream 76702 65068277 ~ 65153287 (-)
G1318479 NA non-coding downstream 79903 65148421 ~ 65150086 (-)
G1318523 NA non-coding downstream 87258 65141433 ~ 65142731 (-)
G1318561 NA non-coding upstream 21573 65255487 ~ 65255864 (-)
G1318867 NA non-coding upstream 43442 65277356 ~ 65277930 (-)
G1318925 NA non-coding upstream 200024 65433938 ~ 65434153 (-)
G1318926 NA non-coding upstream 206174 65440088 ~ 65440350 (-)
G1318934 NA non-coding upstream 234470 65468384 ~ 65468714 (-)
LOC110499867 LOC106576572 other downstream 744671 64481916 ~ 64636502 (-)
G1318164 LOC106576481 other downstream 1002314 64216504 ~ 64227675 (-)
G1318092 NA other downstream 1146101 64083037 ~ 64083888 (-)
G1316904 LOC106609576 other downstream 1942085 63256527 ~ 63287904 (-)
G1318935 NA other upstream 236053 65469967 ~ 65473164 (-)
G1319357 LOC106593594 other upstream 1045131 66279045 ~ 66282108 (-)
LOC110490781 LOC106576552 other upstream 1574533 66808409 ~ 66920061 (-)
G1319781 LOC106576551 other upstream 1622265 66856179 ~ 66862281 (-)
G1319847 NA other upstream 1727037 66960951 ~ 66961304 (-)

Expression


Co-expression Network