G1318958


Basic Information

Item Value
gene id G1318958
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65515813 ~ 65517510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1505056
ctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtccctctttctcaaATTCTCCCCTATGGGAGACAGCCAGTTAGTGTTTGAGCTCTCGTCCATTTCAGACCAAAACATCAGCCCCAAACACACACCTATTCACACAgacatgaggaggaggaggaggaggagaaaggagcaTTCATAGTTTACACTTCAGAAATACTTGTCATTCTCAGGATGAACATTTTATTTCTAATGCAGCCATGGTTTTCTACCTCCCCCTGCTTTTACATCTCAGGGTCTGGAGCCTGTAAACAGCCTGCATAGACTGAAAGAGATGGTATCTCCTGTACTGTTCCTCTCTTTCACCCcgtcatgtttctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctgtctctctctgtctctctgtctctctctctctctctctctgtctctctctgtctctctctgtctgtctcttgctctctctctctctatctctctctctctctctgtctctctctctctctctcaccccagtcTACAGAGTCAAGAGGGAGCAGTCCAAACATGGTAAACAGAGTGTAAGTGAAGTGACTGTGcctgtgtagtagtgtgtgtgttgtactgttgtctgagtgtgtgtgcctgagtgtatgtgtgtctgagaatgtgtgtctgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgagttgttgtgtgtgtgtctgtttatatgtgtgtctgagttgttgtgtgtgtgtctgtttatatgtgtgtctgagtgtgtgtgtgtctgagtgtgtgtgtgtgtgagtgtgtgtgtgtctgagtgtgcgtgtgtctgagtgtgcgtgtgtctgagtgtatgtgtgtctgagtgtgtgtgtgtgtgtgtgtctgagtgtgcgtgtgtctgagtgtgcgtgtgtctgagtgtgtgtgtgtctgagtgtgcgtgtgtctgagtgtgtgtgtgtctgagtgtgtgtgtgtgtgtgtgtctgagtgtgcgtgtgtctgagtgtgtgtgtgtctgagtgtgtgtgtgtgtgtctgagtgtgtgtgtgtctgagtgtgtgtgtgtctgagtgtgtgtccgTCTCTGTGACTCAACTGTAACTGCTTGAATGAACACCTCACACCCACAGTACAGACACAGAGCCACAGAGTCACCAGATATACTGTTACCAttcactatcacctacagtaagaactgagaggagactgttaccattcactatcacctacagtaagaactgagaggagactgttaCCATTCACTATCccctacagtaagaactgagaggagactgttaCCATTCACTATCccctacagtaagaactgagaggagactgtaaccattcactatcacctacagtaagaatTGAGAGGAGACTGTTaccactatcacctacagtaagaactgagaggagactgtaaccattcactatcacctacagtaagaactgagaggagactgtaaccattcactatcacctacagtaagaactgagaggagactgtaaccactatcacctacagtaagaactgagaggagactgtaaccattcactatcacctacagtaagaactgagaggagactgttaCCATTCACTATCccctacagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1505056 True 1678 lncRNA 0.46 2 65515813 65517510

Neighbor

gene id symbol gene type direction distance location
LOC110517393 LOC106576623 coding downstream 212679 65268990 ~ 65303134 (-)
LOC110513258 cacna2d4 coding downstream 284150 65153383 ~ 65231663 (-)
LOC118938827 LOC106576471 coding downstream 457170 65021405 ~ 65058643 (-)
LOC118938826 NA coding downstream 501402 64995972 ~ 65014411 (-)
LOC110512490 LOC106592130 coding upstream 360500 65878010 ~ 65892365 (-)
LOC110511373 LOC106592131 coding upstream 374938 65892448 ~ 65898819 (-)
LOC110511371 LOC106597280 coding upstream 384232 65901742 ~ 65979435 (-)
LOC110499707 LOC106609801 coding upstream 464131 65981641 ~ 65986435 (-)
LOC110500955 cpsf6 coding upstream 470422 65987246 ~ 66009466 (-)
G1318941 NA non-coding downstream 24202 65490038 ~ 65491611 (-)
G1318934 NA non-coding downstream 47099 65468384 ~ 65468714 (-)
G1318926 NA non-coding downstream 75463 65440088 ~ 65440350 (-)
G1318925 NA non-coding downstream 81660 65433938 ~ 65434153 (-)
G1318867 NA non-coding downstream 237883 65277356 ~ 65277930 (-)
G1318961 NA non-coding upstream 7337 65524847 ~ 65525349 (-)
G1318964 NA non-coding upstream 9986 65527496 ~ 65530244 (-)
G1318975 NA non-coding upstream 30060 65547570 ~ 65548358 (-)
G1318976 NA non-coding upstream 33769 65551279 ~ 65552443 (-)
G1318979 NA non-coding upstream 34966 65552476 ~ 65577467 (-)
G1318935 NA other downstream 42649 65469967 ~ 65473164 (-)
G1318477 NA other downstream 364413 65068277 ~ 65153287 (-)
LOC110499867 LOC106576572 other downstream 1030495 64481916 ~ 64636502 (-)
G1318164 LOC106576481 other downstream 1288138 64216504 ~ 64227675 (-)
G1318092 NA other downstream 1431925 64083037 ~ 64083888 (-)
G1319357 LOC106593594 other upstream 761535 66279045 ~ 66282108 (-)
LOC110490781 LOC106576552 other upstream 1290937 66808409 ~ 66920061 (-)
G1319781 LOC106576551 other upstream 1338669 66856179 ~ 66862281 (-)
G1319847 NA other upstream 1443441 66960951 ~ 66961304 (-)
LOC110511902 LOC106609654 other upstream 1563271 67079306 ~ 67084695 (-)

Expression


Co-expression Network