G1319358 (LOC106599552)


Basic Information

Item Value
gene id G1319358
gene name LOC106599552
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66265600 ~ 66266175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1505597
tggttttatactgtagtaGGGAGGTAAAAGGTTTGACTGGCTCCTATTccatggttttatactgtagtaGGGAGGTAAAAGGTTTGACAGGCTCCTATTCCATGGTTTTATTCTGTAGTAGGGAGGTAAAAGGTTTGACAGGCTTCTATTCCATGGTTTTATACTGTTAATTGTCTCACCGTTTCAAAGTCTGTCTTTATTATATGTGACCAACAGGTCTTCATGGTTTCTATGTCCTGTCTTCACAATGTTCAATACATCACCCATTGATACGGTCTGGCTTCATTCTAGTGTTACCTGTTGATGGTGAAAGGTTGCCGTGACTGCTGTTGCTTGGGCATGCAGATGATGCTGGGAGAGGCACGGTTGGGGCTGCCCAGGCCCGAGCTGCCCAGGCTGTTGGTCCTGCCCCCACTAGGCATGCCCCCCACCATGACCTCCTGGCGCCCCACCTGCTGAGGGGTGTTCATCATGTTCCGCGTGTTCATGGGCAGGATGCCCCTACAGTggaaaaaagagagcgag

Function

NR:

description
CCR4-NOT transcription complex subunit 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1505597 True 525 lncRNA 0.49 2 66265600 66266175

Neighbor

gene id symbol gene type direction distance location
LOC110499708 LOC106576651 coding downstream 217701 66033061 ~ 66047899 (-)
LOC110500955 cpsf6 coding downstream 256134 65987246 ~ 66009466 (-)
LOC110499707 LOC106609801 coding downstream 279165 65981641 ~ 65986435 (-)
LOC110511371 LOC106597280 coding downstream 286165 65901742 ~ 65979435 (-)
LOC110511373 LOC106592131 coding downstream 366781 65892448 ~ 65898819 (-)
LOC110519161 NA coding upstream 147160 66413335 ~ 66416251 (-)
LOC118938831 LOC106609809 coding upstream 151279 66417454 ~ 66513524 (-)
LOC110515929 ptprr coding upstream 253543 66518773 ~ 66553585 (-)
LOC110519130 LOC106609628 coding upstream 298743 66564918 ~ 66638625 (-)
LOC110501008 LOC105020375 coding upstream 389023 66655198 ~ 66713032 (-)
G1319340 NA non-coding downstream 52000 66212725 ~ 66213600 (-)
G1319331 NA non-coding downstream 74066 66190889 ~ 66191534 (-)
G1319321 NA non-coding downstream 87427 66177492 ~ 66178173 (-)
G1319225 NA non-coding downstream 123335 66141834 ~ 66142265 (-)
G1319218 NA non-coding downstream 142058 66121288 ~ 66123542 (-)
G1319365 NA non-coding upstream 33274 66299449 ~ 66299659 (-)
G1319366 NA non-coding upstream 36342 66302517 ~ 66304437 (-)
G1319369 NA non-coding upstream 43614 66309789 ~ 66309993 (-)
G1319371 NA non-coding upstream 44852 66311027 ~ 66311450 (-)
G1319373 NA non-coding upstream 51618 66317793 ~ 66318138 (-)
G1318935 NA other downstream 792436 65469967 ~ 65473164 (-)
G1318477 NA other downstream 1114200 65068277 ~ 65153287 (-)
LOC110499867 LOC106576572 other downstream 1780282 64481916 ~ 64636502 (-)
G1318164 LOC106576481 other downstream 2037925 64216504 ~ 64227675 (-)
G1318092 NA other downstream 2181712 64083037 ~ 64083888 (-)
G1319357 LOC106593594 other upstream 12870 66279045 ~ 66282108 (-)
LOC110490781 LOC106576552 other upstream 542272 66808409 ~ 66920061 (-)
G1319781 LOC106576551 other upstream 590004 66856179 ~ 66862281 (-)
G1319847 NA other upstream 694776 66960951 ~ 66961304 (-)
LOC110511902 LOC106609654 other upstream 814606 67079306 ~ 67084695 (-)

Expression


Co-expression Network