G1319366


Basic Information

Item Value
gene id G1319366
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66302517 ~ 66304437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1505611
AGTTCTCTCTTGTTCTCCTGTTCATCCCTGGAAGGAGGATGAGGCTCAGTGAATACGGACAGCTGGAGGTTGTCTGTCACTGATTGGTGGATAATTCTTGTGGGCAGAAAAGGGGATGAAAGGGAGCGAATGACAGAATAAACAGAAGGAAAATAAATGTTGTGTGTTTGAGAGTTAATGTCCAAACTGAACTATTATGGGTCTTGTCTTCACAATATGAACAAATCCACAAACATCTTTTGTGTTCTTTTATTACGAAATAGAGCTACAATATGAACATTGCATTTTCTCCTGGCCTCTTGTCcgtctgtgggtctgtctgtctgtctgtctgtgggtcttCCACTCTGCTACAGTAACATGGGTTGAGGTATTTTCtgcaggtcactgtgttctttgaACACTTCTGTTGGATAATGACAGATCAACCTTGTTCTGTCACTGTCagagggtctgtgtgtgtgtgtgtgtgtgtgtgtattatgatGTCATGGTGCTTCGTGACCAATGGGGAGGTCTGAAGAATGAGGCGTAAACAAAAAGGTTCTGAATGTTTTCAAAATGACAACCAACCAAAACAAAGGGACAAGGTCAGGGAAAAACAGggaaaagaaaaaaaatatatattttaaaaaagagAAACCAGCGTCTGATTGGGCGGCACATCATTCAGTTCAGGGGAAGAAGGACCTGCCCGGAGCCAAAATGGTCGCCGGATTTCCCTCCATTTGGCCTAAAGTCAATTTGCCAGACGGTGGATGGTCGAGGAATAAAAAGCAGGATGCCTGAGCCAGCCACACCGGCATTcgctgtctgtaggtctgtccgtctgtctgctgTGAGGAACCAGGGCCAGGGACCAGAACTCTAACCAGGTCTAGGATCCCATGGTGGACTGAGAACGAGGGGAAGGAAGTCTCTCAGAAGGCTTGCTGGGCTGGGTTGTAGTTGAAGGTGGATGGCACGTGGGGTCTCTCCTCTAGCTTCTCGTATTCCAGATGAAACTCCTAGAAAGGGAGGGGAGGAACAAGGGTTTTAGGGatggtagtggataagggtagtggataagggtagtggataagggtagtggataagggtagtggataagggtagtggacaacggtagtggacaacggtagtggacgacggtagtggacgacggtagtggacgacggtagtggacgacggtagtggataagggtagtggacaacggtagtggacgacggtagtggacgacggtagtggacgacggtagtggacaacggtagtggacaacggtagtggacaacggtagtggacaacggtagtggacaacggtagtggat
>TU1505605
AGTTCTCTCTTGTTCTCCTGTTCATCCCTGGAAGGAGGATGAGGCTCAGTGAATACGGACAGCTGGAGGTTGTCTGTCACTGATTGGTGGATAATTCTTGTGGGCAGAAAAGGGGATGAAAGGGAGCGAATGACAGAATAAACAGAAGGAAAATAAATGTTGTGTGTTTGAGAGTTAATGTCCAAACTGAACTATTATGGGTCTTGTCTTCACAATATGAACAAATCCACAAACATCTTTTGTGTTCTTTTATTACGAAATAGAGCTACAATATGAACATTGCATTTTCTCCTGGCCTCTTGTCcgtctgtgggtctgtctgtctgtctgtctgtgggtcttCCACTCTGCTACAGTAACATGGGTTGAGGTATTTTCtgcaggtcactgtgttctttgaACACTTCTGTTGGATAATGACAGATCAACCTTGTTCTGTCACTGTCagagggtctgtgtgtgtgtgtgtgtgtgtgtgtattatgatGTCATGGTGCTTCGTGACCAATGGGGAGGTCTGAAGAATGAGGCGTAAACAAAAAGGTTCTGAATGTTTTCAAAATGACAACCAACCAAAACAAAGGGACAAGGTCAGGGAAAAACAGggaaaagaaaaaaaatatatattttaaaaaagagAAACCAGCGTCTGATTGGGCGGCACATCATTCAGTTCAGGGGAAGAAGGACCTGCCCGGAGCCAAAATGGTCGCCGGATTTCCCTCCATTTGGCCTAAAGTCAATTTGCCAGACGGTGGATGGTCGAGGAATAAAAAGCAGGATGCCTGAGCCAGCCACACCGGCATTcgctgtctgtaggtctgtccgtctgtctgctgTGAGGAACCAGGGCCAGGGACCAGAACTCTAACCAGGTCTAGGATCCCATGGTGGACTGAGAACGAGGGGAAGGAAGTCTCTCAGAAGGCTTGCTGGGCTGGGTTGTAGTTGAAGGTGGATGGCACGTGGGGTCTCTCCTCTAGCTTCTCGTATTCCAGATGAAACTCC
>TU1505607
TTTTGTGTTCTTTTATTACGAAATAGAGCTACAATATGAACATTGCATTTTCTCCTGGCCTCTTGTCcgtctgtgggtctgtctgtctgtctgtctgtgggtcttCCACTCTGCTACAGTAACATGGGTTGAGGTATTTTCtgcaggtcactgtgttctttgaACACTTCTGTTGGATAATGACAGATCAACCTTGTTCTGTCACTGTCagagggtctgtgtgtgtgtgtgtgtgtgtgtgtattatgatGTCATGGTGCTTCGTGACCAATGGGGAGGTCTGAAGAATGAGGCGTAAACAAAAAGGTTCTGAATGTTTTCAAAATGACAACCAACCAAAACAAAGGGACAAGGTCAGGGAAAAACAGggaaaagaaaaaaaatatatattttaaaaaagagAAACCAGCGTCTGATTGGGCGGCACATCATTCAGTTCAGGGGAAGAAGGACCTGCCCGGAGCCAAAATGGTCGCCGGATTTCCCTCCATTTGGCCTAAAGTCAATTTGCCAGACGGTGGATGGTCGAGGAATAAAAAGCAGGATGCCTGAGCCAGCCACACCGGCATTcgctgtctgtaggtctgtccgtctgtctgctgTGAGGAACCAGGGCCAGGGACCAGAACTCTAACCAGGTCTAGGATCCCATGGTGGACTGAGAACGAGGGGAAGGAAGTCTCTCAGAAGGCTTGCTGGGCTGGGTTGTAGTTGAAGGTGGATGGCACGTGGGGTCTCTCCTCTAGCTTCTCGTATTCCAGATGAAACTCC
>TU1505608
TCATCTTTCTCCAAATCGCATCCCTCCAAAACTACCATCACATGGGTGTTCTTATTGGCTCACTGAGAATGTATCTGACCCTTGATTGTAACGCTTGGTGTTCTTCATTGTTTGCTGTGGTTGTTGAATTGAAAGTGTTCAGGGCGTGAGGCATGGTCCCCTGTCCTGACCAGTTATTGTCGTCCTCTATCCACTGGCTCCAGTACAGTTTTAAtccaggttgttgttgttgttgttgttgttaggcaTGGTCCCCAGAACAGTCCTGTTTTATCCACGTTGTACAGTACGTCCAGTATTGCGTCGCTCCGTGCTCACCTCCTAAAAACGAGGTACAGCCGGGGCGACagtctgtttttatttatttttaaatcttcTCCAAAATAGATgtcatatatataatatatacacatcacacacatctCTTTATTCATCTGTGATGCctgtaagcccccccccccctcccaaaaaatGGAAAAACATGTTGTACTTTTATTACTAAATTGTAACAAAGACAGTTCTCTCTTGTTCTCCTGTTCATCCCTGGAAGGAGGATGAGGCTCAGTGAATACGGACAGCTGGAGGTTGTCTGTCACTGATTGGTGGATAATTCTTGTGGGCAGAAAAGGGGATGAAAGGGAGCGAATGACAGAATAAACAGAAGGAAAATAAATGTTGTGTGTTTGAGAGTTAATGTCCAAACTGAACTATTATGGGTCTTGTCTTCACAATATGAACAAATCCACAAACATCTTTTGTGTTCTTTTATTACGAAATAGAGCTACAATATGAACATTGCATTTTCTCCTGGCCTCTTGTCcgtctgtgggtctgtctgtctgtctgtctgtgggtcttCCACTCTGCTACAGTAACATGGGTTGAGGTATTTTCtgcaggtcactgtgttctttgaACACTTCTGTTGGATAATGACAGATCAACCTTGTTCTGTCACTGTCagagggtctgtgtgtgtgtgtgtgtgtgtgtgtattatgatGTCATGGTGCTTCGTGACCAATGGGGAGGTCTGAAGAATGAGGCGTAAACAAAAAGGTTCTGAATGTTTTCAAAATGACAACCAACCAAAACAAAGGGACAAGGTCAGGGAAAAACAGggaaaagaaaaaaaatatatattttaaaaaagagAAACCAGCGTCTGATTGGGCGGCACATCATTCAGTTCAGGGGAAGAAGGACCTGCCCGGAGCCAAAATGGTCGCCGGATTTCCCTCCATTTGGCCTAAAGTCAATTTGCCAGACGGTGGATGGTCGAGGAATAAAAAGCAGGATGCCTGAGCCAGCCACACCGGCATTcgctgtctgtaggtctgtccgtctgtctgctgTGAGGAACCAGGGCCAGGGACCAGAACTCTAACCAGGTCTAGGATCCCATGGTGGACTGAGAACGAGGGGAAGGAAGTCTCTCAGAAGGCTTGCTGGGCTGGGTTGTAGTTGAAGGTGGATGGCACGTGGGGTCTCTCCTCTAGCTTCTCGTATTCCAGATGAAACTCC
>TU1505609
TTCATGTCATTTTTATTGGCTTTTTCTTTTCCTATGAAAAGCTGCTGTTGAAAACAGCCAAAGTGAAGTGCTTCAGTCCTCATCTTTCTCCAAATCGCATCCCTCCAAAACTACCATCACATGGGTGTTCTTATTGGCTCACTGAGAATGTATCTGACCCTTGATTGTAACGCTTGGTGTTCTTCATTGTTTGCTGTGGTTGTTGAATTGAAAGTGTTCAGGGCGTGAGGCATGGTCCCCTGTCCTGACCAGTTATTGTCGTCCTCTATCCACTGGCTCCAGTACAGTTTTAAtccaggttgttgttgttgttgttgttgttaggcaTGGTCCCCAGAACAGTCCTGTTTTATCCACGTTGTACAGTACGTCCAGTATTGCGTCGCTCCGTGCTCACCTCCTAAAAACGAGGTACAGCCGGGGCGACagtctgtttttatttatttttaaatcttcTCCAAAATAGATgtcatatatataatatatacacatcacacacatctCTTTATTCATCTGTGA
>TU1505612
TCATCTTTCTCCAAATCGCATCCCTCCAAAACTACCATCACATGGGTGTTCTTATTGGCTCACTGAGAATGTATCTGACCCTTGATTGTAACGCTTGGTGTTCTTCATTGTTTGCTGTGGTTGTTGAATTGAAAGTGTTCAGGGCGTGAGGCATGGTCCCCTGTCCTGACCAGTTATTGTCGTCCTCTATCCACTGGCTCCAGTACAGTTTTAAtccaggttgttgttgttgttgttgttgttaggcaTGGTCCCCAGAACAGTCCTGTTTTATCCACGTTGTACAGTACGTCCAGTATTGCGTCGCTCCGTGCTCACCTCCTAAAAACGAGGTACAGCCGGGGCGACagtctgtttttatttatttttaaatcttcTCCAAAATAGATgtcatatatataatatatacacatcacacacatctCTTTATTCATCTGTGA
>TU1505606
TTCATGTCATTTTTATTGGCTTTTTCTTTTCCTATGAAAAGCTGCTGTTGAAAACAGCCAAAGTGAAGTGCTTCAGTCCTCATCTTTCTCCAAATCGCATCCCTCCAAAACTACCATCACATGGGTGTTCTTATTGGCTCACTGAGAATGTATCTGACCCTTGATTGTAACGCTTGGTGTTCTTCATTGTTTGCTGTGGTTGTTGAATTGAAAGTGTTCAGGGCGTGAGGCATGGTCCCCTGTCCTGACCAGTTATTGTCGTCCTCTATCCACTGGCTCCAGTACAGTTTTAAtccaggttgttgttgttgttgttgttgttaggcaTGGTCCCCAGAACAGTCCTGTTTTATCCACGTTGTACAGTACGTCCAGTATTGCGTCGCTCCGTGCTCACCTCCTAAAAACGAGGTACAGCCGGGGCGACagtctgtt
>TU1505610
TCATCTTTCTCCAAATCGCATCCCTCCAAAACTACCATCACATGGGTGTTCTTATTGGCTCACTGAGAATGTATCTGACCCTTGATTGTAACGCTTGGTGTTCTTCATTGTTTGCTGTGGTTGTTGAATTGAAAGTGTTCAGGGCGTGAGGCATGGTCCCCTGTCCTGACCAGTTATTGTCGTCCTCTATCCACTGGCTCCAGTACAGTTTTAAtccaggttgttgttgttgttgttgttgttaggcaTGGTCCCCAGAACAGTCCTGTTTTATCCACGTTGTACAGTACGTCCAGTATTGCGTCGCTCCGTGCTCACCTCCTAAAAACGAGGTACAGCCGGGGCGACagtctgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1505611 False 1326 lncRNA 0.48 1 66302517 66303842
TU1505605 False 1008 lncRNA 0.46 1 66302835 66303842
TU1505607 False 771 lncRNA 0.47 1 66302835 66303605
TU1505608 False 1524 lncRNA 0.45 1 66302835 66304358
TU1505609 False 519 lncRNA 0.42 1 66303919 66304437
TU1505612 False 440 lncRNA 0.43 1 66303919 66304358
TU1505606 False 435 lncRNA 0.46 1 66304003 66304437
TU1505610 True 356 lncRNA 0.47 1 66304003 66304358

Neighbor

gene id symbol gene type direction distance location
LOC110499708 LOC106576651 coding downstream 254618 66033061 ~ 66047899 (-)
LOC110500955 cpsf6 coding downstream 293051 65987246 ~ 66009466 (-)
LOC110499707 LOC106609801 coding downstream 316082 65981641 ~ 65986435 (-)
LOC110511371 LOC106597280 coding downstream 323082 65901742 ~ 65979435 (-)
LOC110511373 LOC106592131 coding downstream 403698 65892448 ~ 65898819 (-)
LOC110519161 NA coding upstream 108898 66413335 ~ 66416251 (-)
LOC118938831 LOC106609809 coding upstream 113017 66417454 ~ 66513524 (-)
LOC110515929 ptprr coding upstream 215281 66518773 ~ 66553585 (-)
LOC110519130 LOC106609628 coding upstream 260481 66564918 ~ 66638625 (-)
LOC110501008 LOC105020375 coding upstream 350761 66655198 ~ 66713032 (-)
G1319365 NA non-coding downstream 2858 66299449 ~ 66299659 (-)
G1319358 LOC106599552 non-coding downstream 36342 66265600 ~ 66266175 (-)
G1319340 NA non-coding downstream 88917 66212725 ~ 66213600 (-)
G1319331 NA non-coding downstream 110983 66190889 ~ 66191534 (-)
G1319321 NA non-coding downstream 124344 66177492 ~ 66178173 (-)
G1319369 NA non-coding upstream 5352 66309789 ~ 66309993 (-)
G1319371 NA non-coding upstream 6590 66311027 ~ 66311450 (-)
G1319373 NA non-coding upstream 13356 66317793 ~ 66318138 (-)
G1319374 NA non-coding upstream 14333 66318770 ~ 66319005 (-)
G1319399 NA non-coding upstream 75760 66380197 ~ 66380647 (-)
G1319357 LOC106593594 other downstream 20409 66279045 ~ 66282108 (-)
G1318935 NA other downstream 829353 65469967 ~ 65473164 (-)
G1318477 NA other downstream 1151117 65068277 ~ 65153287 (-)
LOC110499867 LOC106576572 other downstream 1817199 64481916 ~ 64636502 (-)
G1318164 LOC106576481 other downstream 2074842 64216504 ~ 64227675 (-)
LOC110490781 LOC106576552 other upstream 504010 66808409 ~ 66920061 (-)
G1319781 LOC106576551 other upstream 551742 66856179 ~ 66862281 (-)
G1319847 NA other upstream 656514 66960951 ~ 66961304 (-)
LOC110511902 LOC106609654 other upstream 776344 67079306 ~ 67084695 (-)
G1320139 NA other upstream 888679 67193116 ~ 67193493 (-)

Expression


Co-expression Network