XLOC_032129


Basic Information

Item Value
gene id XLOC_032129
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32520099 ~ 32595157 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064868
CCACAAGCTAGAAATCATCTTGGTAGTCAAATCTATCAATCTGGAAGAGATTATGAAGCCATTACTAAAGCTTTGGTCCTGTAAGAGAAAAGTCAGAGCCATTATTTAAAAGTGGCAAAAACATGAACAGTCGAGAACATTCCCAAGATTGGCTGGCAGACCAAAATTATCCAAAGACAGCCACAACTCATCCAAGAGGTCGCGAAGGACCCCATAACAACATCTAAAGAACTGCAGGCCTCACTTGCCTCAATTAAGGGTCATTTGCCTTTTCAGATGAGATTATGAGCTGTAATGGAGGGGGAGGTGGAGACTGCTGAGACAAGGAGAAATGGCCTGCTGTGAGGATGGCAGATTTGATGGCTAGTCGATACAGagGGAGAGGAGAGGGGGGGAAATcagaacaacaaaacaacaagaaaGCAGAAAGAAAGACCAAAAGAACAAGCGTTTTTGATAAAGTGCTTACAGAGCGATTACTGTGAGTTGTGCAGAGATGGTGCAGTGCTCACACAGGGCGAGGAAGCATGGCAAAGACATGTGCTCATCTACCATTGTAAAAACTGGAAGATGATATtcatacaattcatttgattttgGAGAACTGAACAAAAACAACTTAATATGATGTATGCTGATATAAAAACAATATCTAAATTAAAA
>TCONS_00064659
CCACAAGCTAGAAATCATCTTGGTAGTCAAATCTATCAATCTGGAAGAGATTATGAAGCCATTACTAAAGCTTTGGTCCTGTAAGAGAAAAGTCAGAGCCATTATTTAAAAGTGGCAAAAACATGAACAGTCGAGAACATTCCCAAGATTGGCTGGCAGACCAAAATTATCCAAAGACAGCCACAACTCATCCAAGAGGTCGCGAAGGACCCCATAACAACATCTAAAGAACTGCAGGCCTCACTTGCCTCAATTAAGGGTCATTTGCCTTTTCAGATGAGATTATGAGCTGTAATGGAGGGGGAGGTGGAGACTGCTGAGACAAGGAGAAATGGCCTGCTGTGAGGATGGCAGATTTGATGGCTAGTCGATACAGagGTGACGTAGTCACCACGTATCCTCACCACCCCCACCAGGTTGGGCCACATTCTTGCTGGGGGTTTGCTCTGCcatgccttcatcttcaggcagtaTTTGCCAGCTCTTCACGAGACCTGGATCATCAATAGGGCTTATGCCAAAGGACCATACA
>TCONS_00062795
TGTTCATTTAAATAACTTCGCTTCTGTCATGTATCAGGAGTTGACTTTTGTTCTTCTGTCCCAGGCGTTCTGGCTCCTCGCCAAGGGCGCACGCGCTGACAGCCGCCACTAATGCCGGTGATAATGCAGATAGTCGAGATGAAACGGGACAGGTCCTTGCGAGAGCCTCATTAGCCAGGCTTCCATCAGCTTAATATTTTGGCTGAAAAGAGGATATGACCATGAACTGAGAGGGTCATTTGCCTTTTCAGATGAGATTATGAGCTGTAATGGAGGGGGAGGTGGAGACTGCTGAGACAAGGAGAAATGGCCTGCTGTGAGGATGGCAGATTTGATGGCTAGTCGATACAGagGGAGAGGAGAGGGGGGGAAATcagaacaacaaaacaacaagaaaGCAGAAAGAAAGACCAAAAGAACAAGCGTTTTTGATAAAGTGCTTACAGAGCGATTACTGTGAGTTGTGCAGAGATGGTGCAGTGCTCACACAGGGCGAGGAAGCATGGCAAAGACATGTGCTCATCTACCATTGTAAAAACTGGAAGATGATATtcatacaattcatttgattttgGAGAACTGAACAAAAACAACTTAATATGATGTATGCTGATATAAAAACAATATCTAAATTAAAACCATCTTTTATAATGC
>TCONS_00062794
TGTTCATTTAAATAACTTCGCTTCTGTCATGTATCAGGAGTTGACTTTTGTTCTTCTGTCCCAGGCGTTCTGGCTCCTCGCCAAGGGCGCACGCGCTGACAGCCGCCACTAATGCCGGTGATAATGCAGATAGTCGAGATGAAACGGGACAGGTCCTTGCGAGAGCCTCATTAGCCAGGCTTCCATCAGCTTAATATTTTGGCTGAAAAGAGGATATGACCATGAACTGAGAGGGAGAGGAGAGGGGGGGAAATcagaacaacaaaacaacaagaaaGCAGAAAGAAAGACCAAAAGAACAAGCGTTTTTGATAAAGTGCTTACAGAGCGATTACTGTGAGTTGTGCAGAGATGGTGCAGTGCTCACACAGGGCGAGGAAGCATGGCAAAGACATGTGCTCATCTACCATTGTAAAAACTGGAAGATGATATtcatacaattcatttgattttgGAGAACTGAACAAAAACAACTTAATATGATGTATGCTGATATAAAAACAATATCTAAATTAAAACCATCTTTTATAATGC
>TCONS_00064661
TGTTCATTTAAATAACTTCGCTTCTGTCATGTATCAGGAGTTGACTTTTGTTCTTCTGTCCCAGGCGTTCTGGCTCCTCGCCAAGGGCGCACGCGCTGACAGCCGCCACTAATGCCGGTGATAATGCAGATAGTCGAGATGAAACGGGACAGGTCCTTGCGAGAGCCTCATTAGCCAGGCTTCCATCAGCTTAATATTTTGGCTGAAAAGAGGATATGACCATGAACTGAGAGGGTCATTTGCCTTTTCAGATGAGATTATGAGCTGTAATGGAGGGGGAGGTGGAGACTGCTGAGACAAGGAGAAATGGCCTGCTGTGAGGATGGCAGATTTGATGGCTAGTCGATACAGagGTGACGTAGTCACCACGTATCCTCACCACCCCCACCAGGTTGGGCCACATTCTTGCTGGGGGTTTGCTCTGCcatgccttcatcttcaggcagtaTTTGCCAGCTCTTCACGAGACCTGGATCATCAATAGGGCTTATGCCAAAGGACCATACATAAAGTGTAACTGAACACATAAAGTGTCGCTTCcgagtctttctggtagaaaaaa
>TCONS_00064660
TGTTCATTTAAATAACTTCGCTTCTGTCATGTATCAGGAGTTGACTTTTGTTCTTCTGTCCCAGGCGTTCTGGCTCCTCGCCAAGGGCGCACGCGCTGACAGCCGCCACTAATGCCGGTGATAATGCAGATAGTCGAGATGAAACGGGACAGGTCCTTGCGAGAGCCTCATTAGCCAGGCTTCCATCAGCTTAATATTTTGGCTGAAAAGAGGATATGACCATGAACTGAGAGGTGACGTAGTCACCACGTATCCTCACCACCCCCACCAGGTTGGGCCACATTCTTGCTGGGGGTTTGCTCTGCcatgccttcatcttcaggcagtaTTTGCCAGCTCTTCACGAGACCTGGATCATCAATAGGGCTTATGCCAAAGGACCATACATAAAGTGTAACTGAACACATAAAGTGTCGCTTCcgagtctttctggtagaaaaaa

Function

GO:

id name namespace
GO:0046900 tetrahydrofolylpolyglutamate metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117287

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064868 False 663 lncRNA 0.41 3 32520099 32557977
TCONS_00064659 False 532 lncRNA 0.47 3 32520099 32595102
TCONS_00062795 False 654 lncRNA 0.43 3 32521642 32557993
TCONS_00062794 False 534 lncRNA 0.42 2 32521642 32557993
TCONS_00064661 False 562 lncRNA 0.49 3 32521642 32595157
TCONS_00064660 True 442 lncRNA 0.49 2 32521642 32595157

Neighbor

gene id symbol gene type direction distance location
XLOC_032128 kank4 coding upstream 12801 32410848 ~ 32507298 (+)
XLOC_032127 dock7 coding upstream 115466 32326074 ~ 32404633 (+)
XLOC_032126 NA coding upstream 196332 32320730 ~ 32323767 (+)
XLOC_032125 NA coding upstream 372367 32138926 ~ 32147732 (+)
XLOC_032124 NA coding upstream 412607 32093848 ~ 32107492 (+)
XLOC_032130 cyldl coding downstream 238850 32834007 ~ 32844728 (+)
XLOC_032131 ghrhrb coding downstream 287664 32882821 ~ 32961129 (+)
XLOC_032132 NA coding downstream 375396 32970553 ~ 33037109 (+)
XLOC_032133 NA coding downstream 442442 33037599 ~ 33039353 (+)
XLOC_032134 pomgnt1 coding downstream 481682 33076839 ~ 33095766 (+)
XLOC_032122 NA non-coding upstream 684145 31826335 ~ 31835954 (+)
XLOC_032121 NA non-coding upstream 739616 31758398 ~ 31780483 (+)
XLOC_032135 NA non-coding downstream 685196 33280353 ~ 33281036 (+)
XLOC_032137 CR855206.3 non-coding downstream 1218131 33813288 ~ 33835181 (+)
XLOC_032138 CR855206.2 non-coding downstream 1222534 33817691 ~ 33819979 (+)

Expression


Co-expression Network