G1319840 (LOC106609624)


Basic Information

Item Value
gene id G1319840
gene name LOC106609624
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66944270 ~ 66944941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1506229
CCTCTAACTCCCCAATAATTTCTTTGAGCTCCGTCTCCGCGGTAACGAAGGAGGTCAGAGGTGAGTAGAGCATGCCGCTGCCCATGCCACCACTGTTAACCCAGCTCCTGGCCTTcctctccaggttctccctcttcctcctctccctctcctccaggctCAACTCACTGGGGGGAACCCGGGGGGAGATGGGCTCCACCATGCCCACACACAGGGCACTGAGAAAAGGATCCTCTGGAGCTGAGGCTGGGTCACTTTGGTCCAACCCTGGAAGGGAATTGTCCTCTAACAAAATGGCGGAGGTAAGTGATGTCATTGCATCTTCCTCATTCTGATCTGTTAACCCTGTTGTGTTGGTCTGTgcctccccatctcttctccccttcccctcctccttctcggCATCCCCACTCGTCTTAAccatatcccctctctctctctcaccgggTGCAATATCCTCCAAGTCCTTCTGGCCTGAAGGAGGCATCACTGTCGGAGTCCTATTGGCTTTGCTGTGCCTCTGGTAGGCCCGGGAGTACTTCTTGagcttcctgttcctctcctggGCGCCGTGCGTGTTGACGCTGGATGAGTCGATGCCGTACACCTGGAGGCCGTACTGCAGCGACAGGAAGGAGCACAGGTAACCTTTCCCCGAGCCCACATCAATCA

Function

NR:

description
methyltransferase-like protein 25, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1506229 True 672 lncRNA 0.57 1 66944270 66944941

Neighbor

gene id symbol gene type direction distance location
LOC110490598 LOC106576550 coding downstream 1520 66940740 ~ 66942750 (-)
LOC110490597 LOC106609625 coding downstream 3602 66924042 ~ 66940668 (-)
LOC110490781 LOC106576552 coding downstream 24209 66808409 ~ 66920061 (-)
LOC110501008 LOC105020375 coding downstream 231238 66655198 ~ 66713032 (-)
LOC110519130 LOC106609628 coding downstream 313669 66564918 ~ 66638625 (-)
LOC118938832 LOC106609653 coding upstream 126373 67071314 ~ 67075634 (-)
LOC110511902 LOC106609654 coding upstream 134365 67079306 ~ 67084695 (-)
LOC110501001 LOC106609634 coding upstream 210483 67155424 ~ 67350716 (-)
LOC110499840 LOC106609638 coding upstream 426441 67371382 ~ 67378695 (-)
LOC118938833 LOC106608919 coding upstream 840276 67785217 ~ 67797863 (-)
G1319817 NA non-coding downstream 24868 66912200 ~ 66919402 (-)
G1319829 NA non-coding downstream 42788 66900897 ~ 66901482 (-)
G1319826 NA non-coding downstream 53452 66890133 ~ 66890818 (-)
G1319818 NA non-coding downstream 59372 66869294 ~ 66884898 (-)
G1319841 NA non-coding upstream 305 66945246 ~ 66945497 (-)
G1319843 NA non-coding upstream 8697 66953638 ~ 66953932 (-)
G1319845 NA non-coding upstream 13857 66958798 ~ 66959012 (-)
G1319846 NA non-coding upstream 14989 66959930 ~ 66960160 (-)
G1319849 NA non-coding upstream 17797 66962738 ~ 66963055 (-)
G1319781 LOC106576551 other downstream 81989 66856179 ~ 66862281 (-)
G1319357 LOC106593594 other downstream 662162 66279045 ~ 66282108 (-)
G1318935 NA other downstream 1471106 65469967 ~ 65473164 (-)
G1318477 NA other downstream 1792870 65068277 ~ 65153287 (-)
G1319847 NA other upstream 16010 66960951 ~ 66961304 (-)
G1320139 NA other upstream 248175 67193116 ~ 67193493 (-)
LOC110513021 exoc4 other upstream 1127460 67998532 ~ 68239937 (-)

Expression


Co-expression Network