XLOC_032130 (cyldl)


Basic Information

Item Value
gene id XLOC_032130
gene name cyldl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32834007 ~ 32844728 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062796
TCTTACTTTGCAGCTCCTCTATTTCTCTCTTAAGCGCTTCACGTTCAGCCATCTTCACACCAAAACACGACCGTCATAAAAACCGCGACGCCGGCTGTGATGACGTATACAACCAACATCCAATCACAACACGGCTCTCAACATGACTCTTTACTTTTGGTTTTGCTCAAAAACACTTCCCCTATCTTTACAAAACATCGACAGCACAGAATGTCAGGGGTAGTTTTATTTAGAACACCATTATATACTTCTGACAATCTCTTTAAATTCTAGTAAACGTTTAATCGTAGTACACAACGTATGTAGAGAAAGACGAATAGTTCTGCTAGAGTTCTGCTGAGTTTACTTTTTTAACAGAAATCGAAAGTATTGACATCGGGTGTCTAGAAACTATCACCTACATCTAATAATGCAGTTGTATGAATCGCTTAGTTTTTTTGGAATTATTTGAATGACAAGAGTAACATGCATTGCTCAGAGgaaatgagcaaataaatgaacattttgccCACGCTGGAAACACTGCTGTCAACCTGAAAGCTTGTTATACTTCAGTTTTCCAAGTGACACTTTTGAGAAATGGCCGCAGCCAACAAGAAGATATACTTCATTATCACTGCGAAGCCTCCTTCACCAAATAGCTTCATTGATGCTGGTGAAATATGCTACATAGATAAACAACAGTATGAGTCCAGGCTAAAAAGAAAGGCTACAGACACTTTACCTGTAGTTCGTATGGGTAGCTTACTTGAAACCGACCTTGATAAAGTTCTTCTGATGCCATTGAGCATCAGGGAAGCAGAATTACTGCTGGCTCTTGAACCTAATGAAGACCGACTTTTGGCACTGAAAGATAAAAAGGTTTTACAGGAGGCCTCAAATCTGACTACAGACGATCAGGTTTATGTGGAATACAATGGGAAACAACTCAAAGGTATAATTCGATACATTGGCAGTATTACGGATTACAGCATTAATCCTTTAGCAGGAACATTCTTTGGGGTGGAACTACAGGGTGGCGACAAAGGAAAGGGGCAAAATGATGGCTCCTACTATGGCAAAACATACTTTAAATGTTCCAAAAACTCAGGAATATTTGCACCTTTTACAAGAATCACACCAATAGATCATAAGCCTTCAGCACCACCCCTATCAACTCCACCTCTCTTGTCCATGACATCAAGTGAGCCTCTTGATGTTGGAGACAGAGTAATCTATTTCTTTGACAATAATCCTCACCATGGCATGGTTATGGATATAAAGGACATGCAAGATGGTAAAATGGTTCTCATATCTACTGATAAAGATGAAGAGGGCAAACAAGGTGGAGAGATATTGGTCCCACTGGATTGCATAATGAAAGAGGAGTTGTTAAATACTGATGAAAAAATGGACACTTCACAGAACCAAGAGATGGACAGCGCTTCTGATTCAGAAGGAATCTCGGTTGGCTCCCTAGTGCAGTATATGGGCAATAAACTTGGAATTGTCCGCTGGATTGGATATCTACCTGATTTTTCTGAGAAGAGTGCTGGGCTGGAAGTGGTGACAGGCAGTGGAGTGTGTGATGGAAAATATAAAGGAAAACAGTACTTTGACTGTGATCCTAAAAGTGGTTTATTTGTGAAACTGTCAGTTTGTCGGCCTGATGATTCTGTCTCTGGTGCAAATGAGAACAAATCTAATGGATACATTGATCATGATGGGGTGTCTGTGGAAGTAGAAAATGTACCTCCTATTAGAACAGAAGATGTGTCACAGCGATTGATAGGCCAGAACAAGGGCATTCAGGGTCACTGCAACTCTTGTTATATGGACTCTGCCCTGTTCAGTGTGTTTTCCTGTTCATCAGTTCTGGATTCTCTGCTTTTTAAGTCCATAAATCCCGAGGATAAAACCATTCAAGACATCTTGCTGAAGAACATTGTCAACCCTCTTCGCAAacAAGGTTTCGTCTCTGCGCGCTGTGTGATGAATCTTCGGAAACAATTACAAAAACGGGAACACTGCCCCACTTACACCACAGATGAGAAGGATCCTGAAGAGTTCCTCTCTCTCATTATGCAAGAGATTCTCTTTCTAGATCCGCTGCTCAGTCTCTGCCAATCAGGAAGTAGACACAAAGTGCAAAGCTGTTACTACTATCAAATCTTTATGGATTATAACCACCATTTAGTCCTGCCAACAGTTCAACAGCTACTAGAACATTCATTTTACAGCAACAGTCTCAAGCTAGCAGAGGTTCCTGCCTGTCTGATTCTCACGATGCCTCGCTCAGGAAAGAGTTttaaaatgtttcctaaaatcaTTCCTTCTACTGAATTGGACATCACCGGTCTTCTCGCTGATAGTCCTCAGCAGTGTGTGTCGTGTGGTCTTTTGGCAAATGAGGAGTGTGCTGAATGCTTCAGAGACGCACTGTTTAGTGATACAGGGTTTAAATATTTCTGTACCAAATGTTCCACTCAGGTTCACTCTCACCAGCAGCGTCGACACCACACTCCCAGCAGTCTTCATCTTCCTCAGGGCTTCTCTTACTCTGATTCACTCACGCCTCCACCAGAGAAACTGGAGCTGTTTGCTGTGCTGTGCATAGAGACCAGCCACTACGTCTCTTTCGTCAAACATGGACCTCGGGATACTGACTGGATTTTCTTTGATAGCATGGCTGACCGTGTTGGTGAAAGCAATGGTTATAATATCCCAGAAGTGCGTGCTTGTCCTGAGGTTGGCCAGTATTTACACATGCCTTTGGCTCAGCTGGCAAATCAAGTGCCTCGAGAAATGGATGGTGTGGCCAAACGACTCTTCTGCGATGGTTACATGTACCTTTACCAGAGTAAGAGCATGTCTCTATATCGATGAGTGAATCTACTGAACATGTACAATAAACGAGAGTGTGCAATCAGATTACATTAGACTA
>TCONS_00062797
ATGGCCGCAGCCAACAAGAAGATATACTTCATTATCACTGCGAAGCCTCCTTCACCAAATAGCTTCATTGATGCTGGTGAAATATGCTACATAGATAAACAACAGTATGAGTCCAGGCTAAAAAGAAAGGCTACAGACACTTTACCTGTAGTTCGTATGGGTAGCTTACTTGAAACCGACCTTGATAAAGTTCTTCTGATGCCATTGAGCATCAGGGAAGCAGAATTACTGCTGGCTCTTGAACCTAATGAAGACCGACTTTTGGCACTGAAAGATAAAAAGGTTTTACAGGAGGCCTCAAATCTGACTACAGACGATCAGGTTTATGTGGAATACAATGGGAAACAACTCAAAGGTATAATTCGATACATTGGCAGTATTACGGATTACAGCATTAATCCTTTAGCAGGAACATTCTTTGGGGTGGAACTACAGGGTGGCGACAAAGGAAAGGGGCAAAATGATGGCTCCTACTATGGCAAAACATACTTTAAATGTTCCAAAAACTCAGGAATATTTGCACCTTTTACAAGAATCACACCAATAGATCATAAGCCTTCAGCACCACCCCTATCAACTCCACCTCTCTTGTCCATGACATCAAGTGAGCCTCTTGATGTTGGAGACAGAGTAATCTATTTCTTTGACAATAATCCTCACCATGGCATGGTTATGGATATAAAGGACATGCAAGATGGTAAAATGGTTCTCATATCTACTGATAAAGATGAAGAGGGCAAACAAGGTGGAGAGATATTGGTCCCACTGGATTGCATAATGAAAGAGGAGTTGTTAAATACTGATGAAAAAATGGACACTTCACAGAACCAAGAGATGGACAGCGCTTCTGATTCAGAAGGAATCTCGGTTGGCTCCCTAGTGCAGTATATGGGCAATAAACTTGGAATTGTCCGCTGGATTGGATATCTACCTGATTTTTCTGAGAAGAGTGCTGGGCTGGAAGTGGTGACAGGCAGTGGAGTGTGTGATGGAAAATATAAAGGAAAACAGTACTTTGACTGTGATCCTAAAAGTGGTTTATTTGTGAAACTGTCAGTTTGTCGGCCTGATGATTCTGTCTCTGGTGCAAATGAGAACAAATCTAATGGATACATTGATCATGATGGGGTGTCTGTGGAAGTAGAAAATGTACCTCCTATTAGAACAGAAGATGTGTCACAGCGATTGATAGGCCAGAACAAGGGCATTCAGGGTCACTGCAACTCTTGTTATATGGACTCTGCCCTGTTCAGTGTGTTTTCCTGTTCATCAGTTCTGGATTCTCTGCTTTTTAAGTCCATAAATCCCGAGGATAAAACCATTCAAGACATCTTGCTGAAGAACATTGTCAACCCTCTTCGCAAacAAGGTTTCGTCTCTGCGCGCTGTGTGATGAATCTTCGGAAACAATTACAAAAACGGGAACACTGCCCCACTTACACCACAGATGAGAAGGATCCTGAAGAGTTCCTCTCTCTCATTATGCAAGAGATTCTCTTTCTAGATCCGCTGCTCAGTCTCTGCCAATCAGGAAGTAGACACAAAGTGCAAAGCTGTTACTACTATCAAATCTTTATGGATTATAACCACCATTTAGTCCTGCCAACAGTTCAACAGCTACTAGAACATTCATTTTACAGCAACAGTCTCAAGCTAGCAGAGGTTCCTGCCTGTCTGATTCTCACGATGCCTCGCTCAGGAAAGAGTTttaaaatgtttcctaaaatcaTTCCTTCTACTGAATTGGACATCACCGGTCTTCTCGCTGATAGTCCTCAGCAGTGTGTGTCGTGTGGTCTTTTGGCAAATGAGGAGTGTGCTGAATGCTTCAGAGACGCACTGTTTAGTGATACAGGGTTTAAATATTTCTGTACCAAATGTTCCACTCAGGTTCACTCTCACCAGCAGCGTCGACACCACACTCCCAGCAGTCTTCATCTTCCTCAGGGCTTCTCTTACTCTGATTCACTCACGCCTCCACCAGAGAAACTGGAGCTGTTTGCTGTGCTGTGCATAGAGACCAGCCACTACGTCTCTTTCGTCAAACATGGACCTCGGGATACTGACTGGATTTTCTTTGATAGCATGGCTGACCGTGTTGGTGAAAGCAATGGTTATAATATCCCAGAAGTGCGTGCTTGTCCTGAGGTTGGCCAGTATTTACACATGCCTTTGGCTCAGCTGGCAAATCAAGTGCCTCGAGAAATGGATGGTGTGGCCAAACGACTCTTCTGCGATGGTTACATGTACCTTTACCAGAGTAAGAGCATGTCTCTATATCGATGA

Function

symbol description
cyldl Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K63-linked deubiquitination. Predicted to act upstream of or within Wnt signaling pathway; innate immune response; and proteolysis. Predicted to be located in several cellular components, including microtubule cytoskeleton; perinuclear region of cytoplasm; and plasma membrane. Predicted to be active in cytosol.

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0061578 Lys63-specific deubiquitinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-190 Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K63-linked deubiquitination. Predicted to act upstream of or within Wnt signaling pathway; innate immune response; and proteolysis. Predicted to be located in several cellular components, including microtubule cytoskeleton; perinuclear region of cytoplasm; and plasma membrane. Predicted to be active in cytosol.

Ensembl:

ensembl_id ENSDARG00000090153

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062796 False 2923 mRNA 0.42 15 32834007 32844728
TCONS_00062797 True 2286 mRNA 0.43 14 32834760 32844670

Neighbor

gene id symbol gene type direction distance location
XLOC_032129 NA coding upstream 238850 32520099 ~ 32595157 (+)
XLOC_032128 kank4 coding upstream 326709 32410848 ~ 32507298 (+)
XLOC_032127 dock7 coding upstream 429374 32326074 ~ 32404633 (+)
XLOC_032126 NA coding upstream 510240 32320730 ~ 32323767 (+)
XLOC_032125 NA coding upstream 686275 32138926 ~ 32147732 (+)
XLOC_032131 ghrhrb coding downstream 38093 32882821 ~ 32961129 (+)
XLOC_032132 NA coding downstream 125825 32970553 ~ 33037109 (+)
XLOC_032133 NA coding downstream 192871 33037599 ~ 33039353 (+)
XLOC_032134 pomgnt1 coding downstream 232111 33076839 ~ 33095766 (+)
XLOC_032135 NA coding downstream 435625 33280353 ~ 33281036 (+)
XLOC_032124 NA non-coding upstream 726515 32093848 ~ 32107492 (+)
XLOC_032122 NA non-coding upstream 998053 31826335 ~ 31835954 (+)
XLOC_032137 CR855206.3 non-coding downstream 968560 33813288 ~ 33835181 (+)
XLOC_032138 CR855206.2 non-coding downstream 972963 33817691 ~ 33819979 (+)

Expression


Co-expression Network