XLOC_032134 (pomgnt1)


Basic Information

Item Value
gene id XLOC_032134
gene name pomgnt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 33076839 ~ 33095766 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062799
GGCTTCACAACACTCGTTACCTGCATATGGCCAAACGTTAGTAAACCCGACATAAACTAAATTACAGTCGTATTTTCTGGCGTGGCGGGACGTCGTTTCCGTGCGAAACAAAACAGTTCTGAGATGAAGAAGACGTGATCAAAGGCGGATGCAGGCAGGTGTTGTGATCAGGAGCAGCGGGCAGGACTGCAGGTATGGACACCTGGACACCAAACCCGAGAGCCAAGCCCTTCATCCCCCGCCAGCAGCGCAGCCTCTACCTTACTTGGAAATACAGACTTACCAACAAAAGAGCAGTGCGAAGAATCTGCCAGgcTAGTGCTGTGCTGTTTCTACTGATCACAGTGATTGTGAATATCAAACTCATTCTTGATACAAGAAGAGTTGCCAGTGAAGATGATGCGGCTCAAGAATACGATGATGCCCTGCCTAACATGGAAACCCCACGCAGACCAGCCAGTGGGAGGAAAGTTTTGGACATTGAGGTGTACTCTAGCCGCTCCAAGGTGTATGTGGCAGTAGACGGCACCACTGTGCTGGAAGATGAGATAAGGGAGCAGGGCCGAGGCATTCATGTTATTGTTCTAAATCAGGCCACAGGTCATGTCATGGCCAAAAGAGTGTTCGATACTTATTCTCCACATGAGGATGAAGCCATGATTCTCTTCCTCAACATGGTCACACGTGGAAGAATCCTTATCTTCACTATTAAGGATGAGGGGACTTTTCATTTAAAGGATGCTGCCAAGAATCTTCTTAAAGGTTTGGGCAGTCAAGTTGCTGTCACCTTAGGTTGGAGAGATATGTGGACTCTAGTTGTGAAAAAGGGAGGTCAGGTGTATGGGGAGAAGCATTCAAAATCTCCTGCTCTGTCCACATGGGGGGATCCTGTGCTGCTGAAGACTGAGGTGCAGCTCACAGCTTCTGAAGAGGCAGAGTGTCATTGGGCAGACACAGAGCTGAACCGCCGGAGGAAGCTCTTCTGCAGTAAAGTGGAAGGATACGGGAGCATTTGTAGTTGCAAGGATCCAGCTCCCATTGAGTTCAATCCAGACCCACTGTCTAACAACAATGTCTACAACATCCCAGTAGCAGTTATCGCTGGAAATAGACCAAACTATCTCTATAGAATGCTGCGCTCTCTTCTTTCCTCCCATGGTGTCAATCCACAGATGATCACTGTTTTTATTGATGGATATTATGAGGAGCCCATGGATGTGGTAGATCTGTTCGGCCTTAAAGGAGTTCAGCATACGCCTATCAGTATTAAAAACGCAAGAGTATCACAGCACTACAAAGCCAGCTTGACTGCAACCTTCAATCTTCATCCAGATGCAGATTTTGCCATTGTCCTCGAGGAGGACCTGGATATTTCCATAGATTTTTTCAGCTTTCTCGGTCAGACCATCCATTTGTTGCATGAGGATGACAGTCTGTACTGTATCTCAGCCTGGAATGACCAAGGTTACGAGCATACGGCGGAGGACCCATCACTGCTGTACAGGGTGGAAAGCATGCCTGGCCTTGGCTGGGTGCTTAAAAAGAGCCTTTACAAGGATGAGCTGGAACCCAAATGGCCGACTCCTGAGAAGCTGTGGGATTGGGATATGTGGATGCGGATGCCAGAGCAGAGGAAGGGAAGAGAGTGTGTCATTCCTGATGTTTCCCGCTCTTATCACTTTGGCATCATTGGCTTAAACATGAATGGTTACTTCCATGAAGTTTACTTTAAAAAGCACAAGTTCAACACTATTCCGAATGTTCAGATGAAGAATGTTGAGAACTTGAAAAAAGATCCATATGAGATTGAAATTCAAAACTTACTACGTGAAGCTGAGGTTCTGGACCACAGTAAAAACCCATGTGAAGACTCGTTTATCCCAGATACAGAGGGAAAGACCTTTGTCATGTTCATCAAAATGGAACAGGAAACAGACACAAACACTTGGACAGAGTTGGCGAAGTGCCTGCATGTGTGGGACCTGGATGTACGAGGTTATCACAAAGGACTCTGGAGGCTCTTCAGAAAGAAGAACCACATCCTGGTAGTGGCTGTTCCAATCTCGCCGTACTCTGTTAAGAAGCCCAGTAATGTCACTCCCATTCACCTGGAGCCTGCACCTAAAGAGGAGGGGCCTCCTGTGGAACAGATGTAGACCTGTCTTAATCCAAGCCAAAGGGCTTTTCCTAACCACTAACAGACAAGGCCTGTGTCAGGCTGATAATGGGCCTTGTGTTACACTTCAAGCCCCTGCAAGACAAAGGGGCTGAGCGATAGGATGAACCGCCCTGTGCCGGAAGCATCTAAAAACTACAGGCTCATTGAAGCTAGAGCGATATTTGAgtggatttatttaaaaaaaatcaaaaggtgtGTGACATGACCTCTTATTGTTGGTTTGTGTTTTGGAGTTTTTCCTGGGGTCACACCATTTCATATAAATTTATGCTGGaaggttttattttagaaaatgactgatagatattttaaagtattactggtACTACAATAAAGTGAGTTACTAAATGTGACACAATACTGCGAAAAGGGATTAAAATATGTCGGACGTAAGATGCTTTTAACACTACTGAGTGCATTGGGCCACCCTGCACATATGTTTTAACTTATGTCTATTTATTTTGTCAATATCAAGATAACTAGGTTTATTTTTACCTGATGAATTCAGttttacacatgaaaaaaaatgtaatcaagaaACAAAacgctttttatttgtttacaaacaaaACTGTGTACAGACAAATATATTTTCAGATCAAAAGATTGTCATCatatttttgagtgtttttatCGATTTTTGTTCTTTACTGGCTGAAAAGATTCAAGCAGTATCTGTGAGCTACACATTACTGCACAATCAGAAAATGACAGATTTCAATGTGTGTAATTGGTTTTCTTTAAATGTTGGCCCTCCAGCAAGAGCATTAAGATTTCTCTTTTCTCTGAGATAGACAGGTGATGCTGCTTAGGTGAGATCTATGTGTCCACACAGCCACTTAATAGCCTTACGGTGGAAGATTAACACTTGAAATCAATGCAATCTCAGCTGCATCACAGATCTGCCCTGTGTTAACGTGACTTACTGTATGTAGAGATGCTGGTGGAAAATTGATTTATCACGCAATAATGTCCAAATCATTTCACGGAGGAGATTCCAGACTAGATTGTTGTAAGTTTCAGAGATCGGTACTAAGGTTGCTACAGACTTTTTACTTGTGGTGCCACTaaacattttcatagtatttgaAACATGTGCAATACCATAATAGAAGTGTTTATTATCTCAACATATTATTTTGTACTTCCGTTTGCAGAGGATGTCTAATATGATTCTCCAACAGTTTTGTATATCCAAGTAGTTAAAAATTATTGGttttctaatataaaataaaaatgttttcttaaa
>TCONS_00062800
AAATTACAGTCGTATTTTCTGGCGTGGCGGGACGTCGTTTCCGTGCGAAACAAAACAGTTCTGAGATGAAGAAGACGTGATCAAAGGCGGATGCAGGCAGGTGTTGTGATCAGGAGCAGCGGGCAGGACTGCAGGTATGGACACCTGGACACCAAACCCGAGAGCCAAGCCCTTCATCCCCCGCCAGCAGCGCAGCCTCTACCTTACTTGGAAATACAGACTTACCAACAAAAGAGCAGTGCGAAGAATCTGCCAGTAGCAGTTATCGCTGGAAATAGACCAAACTATCTCTATAGAATGCTGCGCTCTCTTCTTTCCTCCCATGGTGTCAATCCACAGATGATCACTGTTTTTATTGATGGATATTATGAGGAGCCCATGGATGTGGTAGATCTGTTCGGCCTTAAAGGAGTTCAGCATACGCCTATCAGTATTAAAAACGCAAGAGTATCACAGCACTACAAAGCCAGCTTGACTGCAACCTTCAATCTTCATCCAGATGCAGATTTTGCCATTGTCCTCGAGGAGGACCTGGATATTTCCATAGATTTTTTCAGCTTTCTCGGTCAGACCATCCATTTGTTGCATGAGGATGACAGTCTGTACTGTATCTCAGCCTGGAATGACCAAGGTTACGAGCATACGGCGGAGGACCCATCACTGCTGTACAGGGTGGAAAGCATGCCTGGCCTTGGCTGGGTGCTTAAAAAGAGCCTTTACAAGGATGAGCTGGAACCCAAATGGCCGACTCCTGAGAAGCTGTGGGATTGGGATATGTGGATGCGGATGC

Function

symbol description
pomgnt1 Predicted to enable beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity. Predicted to be involved in O-glycan processing. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including axis; fin bud; myotome; nervous system; and shield. Human ortholog(s) of this gene implicated in lissencephaly; muscular dystrophy (multiple); and retinitis pigmentosa. Orthologous to human POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0006493 protein O-linked glycosylation biological_process
GO:0016266 O-glycan processing biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0047223 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
ko00515 Mannose type O-glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-070112-991 Predicted to enable beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity. Predicted to be involved in O-glycan processing. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including axis; fin bud; myotome; nervous system; and shield. Human ortholog(s) of this gene implicated in lissencephaly; muscular dystrophy (multiple); and retinitis pigmentosa. Orthologous to human POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)).

Ensembl:

ensembl_id ENSDARG00000052025

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062799 False 3428 mRNA 0.43 22 33076839 33095766
TCONS_00062800 True 790 mRNA 0.49 10 33076897 33091517

Neighbor

gene id symbol gene type direction distance location
XLOC_032133 NA coding upstream 37486 33037599 ~ 33039353 (+)
XLOC_032132 NA coding upstream 39730 32970553 ~ 33037109 (+)
XLOC_032131 ghrhrb coding upstream 115710 32882821 ~ 32961129 (+)
XLOC_032130 cyldl coding upstream 232111 32834007 ~ 32844728 (+)
XLOC_032129 NA coding upstream 481682 32520099 ~ 32595157 (+)
XLOC_032135 NA coding downstream 184587 33280353 ~ 33281036 (+)
XLOC_032136 pik3r3b coding downstream 441501 33537267 ~ 33558977 (+)
XLOC_032137 CR855206.3 coding downstream 717522 33813288 ~ 33835181 (+)
XLOC_032138 CR855206.2 coding downstream 721925 33817691 ~ 33819979 (+)
XLOC_032139 gpbp1l1 coding downstream 785606 33881372 ~ 33910958 (+)
XLOC_032126 NA non-coding upstream 753072 32320730 ~ 32323767 (+)
XLOC_032125 NA non-coding upstream 929107 32138926 ~ 32147732 (+)
XLOC_032141 NA non-coding downstream 885873 33981639 ~ 33982494 (+)
XLOC_032142 NA non-coding downstream 888103 33983869 ~ 33984665 (+)

Expression


Co-expression Network