XLOC_032135


Basic Information

Item Value
gene id XLOC_032135
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 33280353 ~ 33281036 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064664
tacaaaatcagattggagatatctgcaaatatattatgactagtcatattcctatattgacttccattgaaaaatacttgcagatatctctaaatgagttttgactagtcacaattgtaattagagatatctctaaatgaatttaattaaatatgagttaaatacctggaaatgtggattttttttttgcacacacaaaaaacgcaagtgaccaagcaaagccttaagctcttactgttaactttaattgaatagaaagctttttttttttgcacctttacttaaattgttccttaattgtgtctctgtcatttcaataatatttttaagaagtttttaaattgttttattttccagagacaggcctgtttaatttatttacttaaataagGTTCactttaacaagttgaaacaaaagaaatacataaaaaatagtttacttggtaaaatttgcatttcagtttaatttaaattttttttccccaaatatcgtgatacatatcgaatcgtgaacattatatcgtgatacacattgtatcgtgagctgagtgtatcgttacacccctaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaatctgtcatcatttacatatggtttcaaactcg

Function

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064664 True 684 lncRNA 0.25 1 33280353 33281036

Neighbor

gene id symbol gene type direction distance location
XLOC_032134 pomgnt1 coding upstream 184587 33076839 ~ 33095766 (+)
XLOC_032133 NA coding upstream 241000 33037599 ~ 33039353 (+)
XLOC_032132 NA coding upstream 243244 32970553 ~ 33037109 (+)
XLOC_032131 ghrhrb coding upstream 319224 32882821 ~ 32961129 (+)
XLOC_032130 cyldl coding upstream 435625 32834007 ~ 32844728 (+)
XLOC_032136 pik3r3b coding downstream 256231 33537267 ~ 33558977 (+)
XLOC_032137 CR855206.3 coding downstream 532252 33813288 ~ 33835181 (+)
XLOC_032138 CR855206.2 coding downstream 536655 33817691 ~ 33819979 (+)
XLOC_032139 gpbp1l1 coding downstream 600336 33881372 ~ 33910958 (+)
XLOC_032140 orc1 coding downstream 650059 33931095 ~ 33950917 (+)
XLOC_032129 NA non-coding upstream 685196 32520099 ~ 32595157 (+)
XLOC_032126 NA non-coding upstream 956586 32320730 ~ 32323767 (+)
XLOC_032125 NA non-coding upstream 1132621 32138926 ~ 32147732 (+)
XLOC_032141 NA non-coding downstream 700603 33981639 ~ 33982494 (+)
XLOC_032142 NA non-coding downstream 702833 33983869 ~ 33984665 (+)
XLOC_032145 NA non-coding downstream 904637 34185673 ~ 34186594 (+)

Expression


Co-expression Network