G1320314 (st8sia1)


Basic Information

Item Value
gene id G1320314
gene name st8sia1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67407082 ~ 67410521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1506854
ACAAGTAAtacactacatagggattagggtgccatttcagatgcacacTTGAAATACTTCAAACATTCAAATGGCTCAAATAATTCATACTACTGTATTACCACCTCCCGATATGATCCTCTCTACTGTAGTACTATATTATTCTGTGATGTCGCAGTGTCACATTGTGATTGTGGAAATCAGCTTCAAAAGGGGCACAAGGGAAAATGTCATTCTAAAGACAGCATACAGTAATGTCTAGCATTTCCCTTTGCCTTGGTGAATTCTGAAGGCACAAAAACCTTTCATTATACAGTAGATATGGGTTTGAAGAAACCTCATAATTCACATGATCTGTTCTGTACCTGTAGGTTAGTCCAAACGTTGTTTAAATGTTGTTTCAGTGTTGGTGCTAGACTCCGTGCATGACCCATGCAGACCTAGATTGGCCCATGACATGATTTGGTACTGGTCACATTTGCACAACCAAAATATCAATGACAGTAACAACATTTAAACGTATCATAACAAAATTCAAGACAGGAGTCCATGTAAAACCTAAAGGGCCAGCCCTCTTCCACTGTCTCAACTGTTTGGTGATGATGACAGAAGGACAGAAGAACTAGCACCTACTACACATCATATGTTCATTCCCTTGTATGTGTATACGGAtcagggttggagtcaattccatttcaattggaatatcagtttacttcctgaattgaccgagtttaaatggaattgatcccaatAATCCCTGTTACAGGATCCCATAATCCCTGTTATGAATGACATAAAAAAAACACCTAGAAATAAATGCAGGACAGCAAAGTTCAGGTCACTGACCTGACATTCAGACGCACACTGATGATGGTGAGGACGATGACGATGGTGATGAAGAAGAGTATGAATGTTCAAGTTCAATGTGAACAGGTGTCCGGCACCTGAACAGAAACATGCCGTGTTGTCATCACTCAGTCAAGAGTGAAAGATATGGTAGCTTGTCAATGGAGTGTGTTTGTAAGTGGACCATACCAATAAGCACTCGTAGCGTGAACGGGGGGTGAACCTTCAAGGCCACAACCTCTCGatgaacacacacagatgaggTCATGATTTGTAAAGCTCACATCTTTTTCTCTGCAGTGGATTTTTGTGAAAAGATTTAAATACATACTCAGCTCTCAATCGTAACATTACTAAATCAACGTAGAACATCAACCTATATAAAATGAAAAACATGTATAATTAAAGTCATGATTaacaaatataaataacatacagaTATTTATCAAACACTGCAATGTTCTTGACTTCCCTTTTAGTGAACAGGGATCTGTTCAGCTTGGCTGTAAAATGGAACATTCTAGGAGCTCGATATCGTGCTTCACTCTCCTTTTCTATTGGATCCTACTTTGAACCTCAATGCTGATTGGTTGCTTAAGATGTCCGTGAAGGGTTGTTGTTCAAGACAAAAAATAACAAACTCCTTCGAACGAGCAAGGTACCAAGACATCTTTCAGTCTCCCTTTTAGTCTGCTCTCATACAAGCCTAGTACCAGGACACCTTGGTACCAGGACACTCATAGTCTAGTACCAGGACACCTTGGTACCAGGACACTCATAGCCTAGTACCAGGACACCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACATCTAGGTACCAGGACACTCATAGTCTAGTACCAGGACATCTAGGTACCAGGACACCCATAGCCTAGTACCAGGACACCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACATCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACACCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACATCTAGGTACCAGGACACCCATAGCCTAGTACCAGGAGACCTAGGTACCAGGACATCTTGCTTCCTCCTTTCCTTTTTCCTTCTGTGTTTCTAGTCTTTCAGTCTGTTCTCTTAAGACTTCTATGAAAACCTCTTGGTTAGGATTGTTCCTTCTGTCTCTGTTTAACAAAGACTCAGTGGGGGCATTGGGCCCAGCTGCTCCCTATGTCACATTGAGTAGTCAAAACACAAAGAATCCTCCAGCCCCAGCTGAGACCGTTAGTAGACCTCCTctctgcactcacgcacacacacacacaaacacacacgcacgcacacaaacacacacatagtgagagtggatggaggacaggatagagagagggggtgtgtgGGGGCTTTCTCGGCTGGGTGGGTAACCATGGGTTACATTCTCATGCTAATGGTGAAGAAAGAGGTGGTAGTTTGCGGGTGGTTTGCTGGGGACGATCGCAGGGGGCTGGTGGGTTGTAAGCGAAAGGAAGGGAAGATTTATTAGGGGAGGGTCCCTTGAGTCTTATATAGCCCCTTCCCGAGGTGGGCAGTGTCCCACCCTCATACGCAGTGTGCCGCTCTTGTGCAACTGCCAGAGCTGGACAAACTCCTCAGGCATGGCGTGGAACCCGCTGAACGGCAGCACGTTATCGTAGTAGTGGTGGCTGACGGGCTGCTCGTCGAGCCCAACGCTGAATGGCCAGAAGCCGTAGGCCGTCACCTCCTCACACAGCCCCAGCGCCAGGCTGACCAGGAAGAGGCCTGTGGACAGGCGCTTGGCATGCACTCCGCGACCCTTCCAGAACTTTCCCACGGTCCTGAGAAACTCGGGGTTGGCAAACAGCATGGTGAGGTTGGACGAGGTGTCGGCAAGGGCGTAGTGTGCCCGCAGGGAGGGGTCGGTGCCCGGCTTCATGGAGAAGGCTGGCATGTAAATGTAGCTGGAGCCGTAGGCCTTCATGCTCTCCACAAAGCTTTTCCGCGACCAAAGAAGGTTCTG
>TU1506856
CTTAGTCAAATGGTTTTCATATAGAGGTCAAGGGGGTCATTTTGACTTGGTACTGTcagaaatggtaccctattccagATGTAGTGCACCCTATGGGTTATGGTCACAAGTAAtacactacatagggattagggtgccatttcagatgcacacTTGAAATACTTCAAACATTCAAATGGCTCAAATAATTCATACTACTGTATTACCACCTCCCGATATGATCCTCTCTACTGTAGTACTATATTATTCTGTGATGTCGCAGTGTCACATTGTGATTGTGGAAATCAGCTTCAAAAGGGGCACAAGGGAAAATGTCATTCTAAAGACAGCATACAGTAATGTCTAGCATTTCCCTTTGCCTTGGTGAATTCTGAAGGCACAAAAACCTTTCATTATACAGTAGATATGGGTTTGAAGAAACCTCATAATTCACATGATCTGTTCTGTACCTGTAGGTTAGTCCAAACGTTGTTTAAATGTTGTTTCAGTGTTGGTGCTAGACTCCGTGCATGACCCATGCAGACCTAGATTGGCCCATGACATGATTTGGTACTGGTCACATTTGCACAACCAAAATATCAATGACAGTAACAACATTTAAACGTATCATAACAAAATTCAAGACAGGAGTCCATGTAAAACCTAAAGGGCCAGCCCTCTTCCACTGTCTCAACTGTTTGGTGATGATGACAGAAGGACAGAAGAACTAGCACCTACTACACATCATATGTTCATTCCCTTGTATGTGTATACGGAtcagggttggagtcaattccatttcaattggaatatcagtttacttcctgaattgaccgagtttaaatggaattgatcccaatAATCCCTGTTACAGGATCCCATAATCCCTGTTATGAATGACATAAAAAAAACACCTAGAAATAAATGCAGGACAGCAAAGTTCAGGTCACTGACCTGACATTCAGACGCACACTGATGATGGTGAGGACGATGACGATGGTGATGAAGAAGAGTATGAATGTTCAAGTTCAATGTGAACAGGTGTCCGGCACCTGAACAGAAACATGCCGTGTTGTCATCACTCAGTCAAGAGTGAAAGATATGGTAGCTTGTCAATGGAGTGTGTTTGTAAGTGGACCATACCAATAAGCACTCGTAGCGTGAACGGGGGGTGAACCTTCAAGGCCACAACCTCTCGatgaacacacacagatgaggTCATGATTTGTAAAGCTCACATCTTTTTCTCTGCAGTGGATTTTTGTGAAAAGATTTAAATACATACTCAGCTCTCAATCGTAACATTACTAAATCAACGTAGAACATCAACCTATATAAAATGAAAAACATGTATAATTAAAGTCATGATTaacaaatataaataacatacagaTATTTATCAAACACTGCAATGTTCTTGACTTCCCTTTTAGTGAACAGGGATCTGTTCAGCTTGGCTGTAAAATGGAACATTCTAGGAGCTCGATATCGTGCTTCACTCTCCTTTTCTATTGGATCCTACTTTGAACCTCAATGCTGATTGGTTGCTTAAGATGTCCGTGAAGGGTTGTTGTTCAAGACAAAAAATAACAAACTCCTTCGAACGAGCAAGGTACCAAGACATCTTTCAGTCTCCCTTTTAGTCTGCTCTCATACAAGCCTAGTACCAGGACACCTTGGTACCAGGACACTCATAGCCTAGTACCAGGACACCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACACCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACATCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACACCTAGGTACCAGGACACCTTGGTACCAGGACACTCATAGTCTAGTACCAGGACACCTTGGTACCAGGACACTCATAGCCTAGTACCAGGACACCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACATCTAGGTACCAGGACACCCATAGCCTAGTACCAGGAGACCTAGGTACCAGGACATCTTGCTTCCTCCTTTCCTTTTTCCTTCTGTGTTTCTAGTCTTTCAGTCTGTTCTCTTAAGACTTCTATGAAAACCTCTTGGTTAGGATTGTTCCTTCTGTCTCTGTTTAACAAAGACTCAGTGGGGGCATTGGGCCCAGCTGCTCCCTATGTCACATTGAGTAGTCAAAACACAAAGAATCCTCCAGCCCCAGCTGAGACCGTTAGTAGACCTCCTctctgcactcacgcacacacacacacaaacacacacgcacgcacacaaacacacacatagtgagagtggatggaggacaggatagagagagggggtgtgtgGGGGCTTTCTCGGCTGGGTGGGTAACCATGGGTTACATTCTCATGCTAATGGTGAAGAAAGAGGTGGTAGTTTGCGGGTGGTTTGCTGGGGACGATCGCAGGGGGCTGGTGGGTTGTAAGCGAAAGGAAGGGAAGATTTATTAGGGGAGGGTCCCTTGAGTCTTATATAGCCCCTTCCCGAGGTGGGCAGTGTCCCACCCTCATACGCAGTGTGCCGCTCTTGTGCAACTGCCAGAGCTGGACAAACTCCTCAGGCATGGCGTGGAACCCGCTGAACGGCAGCACGTTATCGTAGTAGTGGTGGCTGACGGGCTGCTCGTCGAGCCCAACGCTGAATGGCCAGAAGCCGTAGGCCGTCACCTCCTCACACAGCCCCAGCGCCAGGCTGACCAGGAAGAGGCCTGTGGACAGGCGCTTGGCATGCACTCCGCGACCCTTCCAGAACTTTCCCACGGTCCTGAGAAACTCGGGGTTGGCAAACAGCATGGTGAGGTTGGACGAGGTGTCGGCAAGGGCGTAGTGTGCCCGCAGGGAGGGGTCGGTGCCCGGCTTCATGGAGAAGGCTGGCATGTAAATGTAGCTGGAGCCGTAGGCCTTCATGCTCTCCACAAAGCTTTTCCGCGACCAAAGAAGGTTCTG

Function

symbol description
st8sia1 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Predicted to be involved in N-glycan processing; oligosaccharide metabolic process; and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including corpuscles of Stannius; forebrain neural plate; kidney; nervous system; and unfertilized egg. Orthologous to human ST8SIA1 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1).

NR:

description
alpha-N-acetylneuraminide alpha-2,8-sialyltransferase isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1506854 False 2863 lncRNA 0.46 2 67407082 67410416
TU1506856 True 2946 lncRNA 0.46 3 67407082 67410521

Neighbor

gene id symbol gene type direction distance location
LOC110499840 LOC106609638 coding downstream 28387 67371382 ~ 67378695 (-)
LOC110501001 LOC106609634 coding downstream 56366 67155424 ~ 67350716 (-)
LOC110511902 LOC106609654 coding downstream 322387 67079306 ~ 67084695 (-)
LOC118938832 LOC106609653 coding downstream 331448 67071314 ~ 67075634 (-)
LOC110490598 LOC106576550 coding downstream 464332 66940740 ~ 66942750 (-)
LOC118938833 LOC106608919 coding upstream 374696 67785217 ~ 67797863 (-)
LOC118938834 LOC106593864 coding upstream 390553 67801074 ~ 67803118 (-)
LOC110501000 LOC106576558 coding upstream 400062 67810583 ~ 67922051 (-)
LOC110500996 LOC106609604 coding upstream 555713 67966234 ~ 67997921 (-)
LOC110513021 exoc4 coding upstream 588011 67998532 ~ 68239937 (-)
G1320230 NA non-coding downstream 46155 67360528 ~ 67360927 (-)
G1320183 NA non-coding downstream 105043 67288856 ~ 67302039 (-)
G1320190 NA non-coding downstream 108968 67297211 ~ 67298114 (-)
G1320165 NA non-coding downstream 149892 67256031 ~ 67257190 (-)
G1320164 NA non-coding downstream 151687 67255077 ~ 67255395 (-)
G1320330 NA non-coding upstream 22939 67433460 ~ 67433948 (-)
G1320342 NA non-coding upstream 52055 67462576 ~ 67463305 (-)
G1320343 NA non-coding upstream 54437 67464958 ~ 67465332 (-)
G1320344 NA non-coding upstream 55761 67466282 ~ 67466563 (-)
G1320312 NA non-coding upstream 56486 67467007 ~ 67472780 (-)
G1320139 NA other downstream 213589 67193116 ~ 67193493 (-)
G1319847 NA other downstream 445778 66960951 ~ 66961304 (-)
LOC110490781 LOC106576552 other downstream 511390 66808409 ~ 66920061 (-)
G1321652 nrf1 other upstream 1620505 69031026 ~ 69073276 (-)
LOC110490790 LOC106609779 other upstream 1745005 69149477 ~ 69163694 (-)
G1321729 NA other upstream 1809782 69220303 ~ 69223028 (-)

Expression


Co-expression Network