G1320508 (LOC106608917)


Basic Information

Item Value
gene id G1320508
gene name LOC106608917
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67699187 ~ 67703881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1507095
CTGACCGGCTTTGCCAATTTGTACTGCTAATTTGGTTAGCTTCCCCTGGAGAACGgacttctccttcttctccttcaagttggatttCCTCTTCTCGTCGATGTCGACTTCGTCGCTGTTGAGCGGCTGCATCTCCATGGCGGCTCCGTCCGCGGCTTTAgCTTTCTTGCGGTTTTCGGCTGCTCCATCTTGCTttttcttctctttcttctccttcttctccttcttcttagcctccttctcctcctcatcatcgtcgTCTTCCTCCGAGGCGCCCAGTAAAGCGAAGATTATTCCAGTTTGAGAGTTCTCACCCACGGCTGTGACCAGCATTTTGCCGGAGCCCTCCATGACATGAGTGCCTGCAGAGGGTAAAGGGGGTGGGTGAGGTAGTGCCGCCATAGACATACAACTGATGCTTACACTGTATAAGATCTCTGCTAGGGCTCTTCCTTACTATTACTTAACTAAAGCCATGTAGACTAGGATTATGCTAACATTTTCCATTACAGTACAATTctatggagagaggggaatgtgGGTGTTTGCAGTCCTAGATGCTGATTCCTGTGGTAAAGTGAGTAAACCTGGGGGATACAGATAAGCATGATGTTTGAACCTGCCtgcagatagagaggagaggtagggccAAAGAGGCAGGCGCCTAGCTAATGCTACAGTGTAAATGCTAGGTTCCCCTGACTATTACTCAGCTAATGCTACAGGCACCAAC

Function

NR:

description
plasma membrane calcium-transporting ATPase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1507095 True 733 lncRNA 0.49 3 67699187 67703881

Neighbor

gene id symbol gene type direction distance location
LOC110499840 LOC106609638 coding downstream 320492 67371382 ~ 67378695 (-)
LOC110501001 LOC106609634 coding downstream 348471 67155424 ~ 67350716 (-)
LOC110511902 LOC106609654 coding downstream 614492 67079306 ~ 67084695 (-)
LOC118938832 LOC106609653 coding downstream 623553 67071314 ~ 67075634 (-)
LOC110490598 LOC106576550 coding downstream 756437 66940740 ~ 66942750 (-)
LOC118938833 LOC106608919 coding upstream 81336 67785217 ~ 67797863 (-)
LOC118938834 LOC106593864 coding upstream 97193 67801074 ~ 67803118 (-)
LOC110501000 LOC106576558 coding upstream 106702 67810583 ~ 67922051 (-)
LOC110500996 LOC106609604 coding upstream 262353 67966234 ~ 67997921 (-)
LOC110513021 exoc4 coding upstream 294651 67998532 ~ 68239937 (-)
G1320478 NA non-coding downstream 47594 67650571 ~ 67651593 (-)
G1320370 NA non-coding downstream 153038 67545893 ~ 67546149 (-)
G1320369 NA non-coding downstream 153358 67545177 ~ 67545829 (-)
G1320350 NA non-coding downstream 217592 67481115 ~ 67481595 (-)
G1320349 NA non-coding downstream 218122 67480706 ~ 67481065 (-)
G1320523 NA non-coding upstream 29907 67733788 ~ 67734064 (-)
G1320534 NA non-coding upstream 88259 67792140 ~ 67792343 (-)
G1320612 NA non-coding upstream 122909 67826790 ~ 67828937 (-)
G1320628 NA non-coding upstream 175457 67879338 ~ 67879591 (-)
G1320139 NA other downstream 505694 67193116 ~ 67193493 (-)
G1319847 NA other downstream 737883 66960951 ~ 66961304 (-)
LOC110490781 LOC106576552 other downstream 803495 66808409 ~ 66920061 (-)
G1321652 nrf1 other upstream 1327145 69031026 ~ 69073276 (-)
LOC110490790 LOC106609779 other upstream 1451645 69149477 ~ 69163694 (-)
G1321729 NA other upstream 1516422 69220303 ~ 69223028 (-)

Expression


Co-expression Network