G1320834


Basic Information

Item Value
gene id G1320834
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 68285896 ~ 68287268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1507505
AAGTGTATTTTCTTCCCAATTATAAAGAAACACCTTGGTCTTATTGTTAAGTCTTGGGAAGAAAATACTGTGCTACAGCGTTACAGCATATAACCAGAGAGAGGCTGGATTTATTCCATGGAGGAATGTCAGTGAAACTGGTTGTAAGGGGAGTGATTGGAATACTAGGTGATAGAGGATGAAGAggggatgggaagaggagagcagGTGAATAAGATAGAGgatgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtgtaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtggaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtgtaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtgtaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtggaggaagaggagagcagGTGAATAAGATAGTGgttgaagagaaacagagtggaggaagaggagtgcaggtgaataagatagtggttgaagagaaacagagtgtaGGAAGAGGAGTGCAGGTGAATAAGTAAGGCCCGGGTATAGAGGCTAGCCTACATAAGCTCTACATAAGTCAGGCTGGAGCGGTAGAAGAAAGCGCTAgttgttgtgttttctctcctcagtctcctGATTCTACGAGGTATTGATTGGTCTTCTCATCAGGATGCATGTCACGTCGCCACGGCagcagggccctatagaacccccGGTACATCACACACAGTGGTAGAGGTGTACTGTGCTCGCATGCTCCCCACGCCATCCTGTAATGGCAACACCGCCATGGCATTAGCCACCAATTACGCGGCCTTCCAGGGGAATTGTCTCGATGGCCATTTAAGCCTgagtggacacacacatacacacacacaaggc
>TU1507521
AAGTGTATTTTCTTCCCAATTATAAAGAAACACCTTGGTCTTATTGTTAAGTCTTGGGAAGAAAATACTGTGCTACAGCGTTACAGCATATAACCAGAGAGAGGCTGGATTTATTCCATGGAGGAATGTCAGTGAAACTGGTTGTAAGGGGAGTGATTGGAATACTAGGTGATAGAGGATGAAGAggggatgggaagaggagagcagGTGAATAAGATAGAGgatgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtggaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtggaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtgtaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtgtaGGAAGAGGAGAGCAGGTGAAGAAGATAGTGgttgaagagaaacagagtggaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtggaggaagaggagagcagGTGAATAAGATAGTGgttgaagagaaacagagtgtaGGAAGAGGAGTGCAGGTGAATAAGATAGTGgttgaagagaaacagagtggaggaagaggagtgcaggtgaataagatagtggttgaagagaaacagagtgtaGGAAGAGGAGTGCAGGTGAATAAGTAAGGCCCGGGTATAGAGGCTAGCCTACATAAGCTCTACATAAGTCAGGCTGGAGCGGTAGAAGAAAGCGCTAgttgttgtgttttctctcctcagtctcctGATTCTACGAGGTATTGATTGGTCTTCTCATCAGGATGCATGTCACGTCGCCACGGCagcagggccctatagaacccccGGTACATCACACACAGTGGTAGAGGTGTACTGTGCTCGCATGCTCCCCACGCCATCCTGTAATGGCAACACCGCCATGGCATTAGCCACCAATTACGCGGCCTTCCAGGGGAATTGTCTCGATGGCCATTTAAGCCTgagtggacacacacatacacacacacaaggc
>TU1507523
AAGTGTATTTTCTTCCCAATTATAAAGAAACACCTTGGTCTTATTGTTAAGTCTTGGGAAGAAAATACTGTGCTACAGCGTTACAGCATATAACCAGAGAGAGGCTGGATTTATTCCATGGAGGAATGTCAGTGAAACTGGTTGTAAGGGGAGTGATTGGAATACTAGGTGATAGAGGATGAAGAggggatgggaagaggagagcagGTGAATAAGATAGAGgatgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtggaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggatgaagagaaacagagtgtaggaagaggagagcagGTGAATAAGATAGTGgttgaagagaaacagagtgtaGGAAGAGGAGTGCAGGTGAATAAGATAGTGgttgaagagaaacagagtggaggaagaggagtgcaggtgaataagatagtggttgaagagaaacagagtgtaGGAAGAGGAGTGCAGGTGAATAAGTAAGGCCCGGGTATAGAGGCTAGCCTACATAAGCTCTACATAAGTCAGGCTGGAGCGGTAGAAGAAAGCGCTAgttgttgtgttttctctcctcagtctcctGATTCTACGAGGTATTGATTGGTCTTCTCATCAGGATGCATGTCACGTCGCCACGGCagcagggccctatagaacccccGGTACATCACACACAGTGGTAGAGGTGTACTGTGCTCGCATGCTCCCCACGCCATCCTGTAATGGCAACACCGCCATGGCATTAGCCACCAATTACGCGGCCTTCCAGGGGAATTGTCTCGATGGCCATTTAAGCCTgagtggacacacacatacacacacacaaggc
>TU1507524
AAGTGTATTTTCTTCCCAATTATAAAGAAACACCTTGGTCTTATTGTTAAGTCTTGGGAAGAAAATACTGTGCTACAGCGTTACAGCATATAACCAGAGAGAGGCTGGATTTATTCCATGGAGGAATGTCAGTGAAACTGGTTGTAAGGGGAGTGATTGGAATACTAGGTGATAGAGGATGAAGAggggatgggaagaggagagcagGTGAATAAGATAGAGgatgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtggaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtgtaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtgtaggaagaggagagcagGTGAATAAGATAGTGgttgaagagaaacagagtgtaGGAAGAGGAGTGCAGgtgaataagatagtggttgaagagaaacagagtgtaGGAAGAGGAGTGCAGGTGAATAAGTAAGGCCCGGGTATAGAGGCTAGCCTACATAAGCTCTACATAAGTCAGGCTGGAGCGGTAGAAGAAAGCGCTAgttgttgtgttttctctcctcagtctcctGATTCTACGAGGTATTGATTGGTCTTCTCATCAGGATGCATGTCACGTCGCCACGGCagcagggccctatagaacccccGGTACATCACACACAGTGGTAGAGGTGTACTGTGCTCGCATGCTCCCCACGCCATCCTGTAATGGCAACACCGCCATGGCATTAGCCACCAATTACGCGGCCTTCCAGGGGAATTGTCTCGATGGCCATTTAAGCCTgagtggacacacacatacacacacacaaggc
>TU1507528
AAGTGTATTTTCTTCCCAATTATAAAGAAACACCTTGGTCTTATTGTTAAGTCTTGGGAAGAAAATACTGTGCTACAGCGTTACAGCATATAACCAGAGAGAGGCTGGATTTATTCCATGGAGGAATGTCAGTGAAACTGGTTGTAAGGGGAGTGATTGGAATACTAGGTGATAGAGGATGAAGAggggatgggaagaggagagcagGTGAATAAGATAGAGgatgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtggaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtggaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtgtaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtgtaggaagaggagagcagGTGAAGAAGATAGTGgttgaagagaaacagagtggaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtggaggaagaggagagcagGTGAATAAGATAGTGgttgaagagaaacagagtgtaGGAAGAGGAGTGCAGGTGAATAAGATAGTGgttgaagagaaacagagtggaggaagaggagtgcagGTGAATAAGTAAGGCCCGGGTATAGAGGCTAGCCTACATAAGCTCTACATAAGTCAGGCTGGAGCGGTAGAAGAAAGCGCTAgttgttgtgttttctctcctcagtctcctGATTCTACGAGGTATTGATTGGTCTTCTCATCAGGATGCATGTCACGTCGCCACGGCagcagggccctatagaacccccGGTACATCACACACAGTGGTAGAGGTGTACTGTGCTCGCATGCTCCCCACGCCATCCTGTAATGGCAACACCGCCATGGCATTAGCCACCAATTACGCGGCCTTCCAGGGGAATTGTCTCGATGGCCATTTAAGCCTgagtggacacacacatacacacacacaaggc
>TU1507533
AAGTGTATTTTCTTCCCAATTATAAAGAAACACCTTGGTCTTATTGTTAAGTCTTGGGAAGAAAATACTGTGCTACAGCGTTACAGCATATAACCAGAGAGAGGCTGGATTTATTCCATGGAGGAATGTCAGTGAAACTGGTTGTAAGGGGAGTGATTGGAATACTAGGTGATAGAGGATGAAGAggggatgggaagaggagagcagGTGAATAAGATAGAGgatgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggatgaagagaaacagagtgtaggaagaggagagcaggtgaataagatagtggttgaagagaaacagagtgtaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtgtaggaagaggagagcaggtgaataagagaggatgaagagaaacagagtggaggaagaggagagcagGTGAATAAGATAGTGgttgaagagaaacagagtgtaGGAAGAGGAGTGCAGGTGAATAAGATAGTGgttgaagagaaacagagtggaggaagaggagtgcagGTGAATAAGTAAGGCCCGGGTATAGAGGCTAGCCTACATAAGCTCTACATAAGTCAGGCTGGAGCGGTAGAAGAAAGCGCTAgttgttgtgttttctctcctcagtctcctGATTCTACGAGGTATTGATTGGTCTTCTCATCAGGATGCATGTCACGTCGCCACGGCagcagggccctatagaacccccGGTACATCACACACAGTGGTAGAGGTGTACTGTGCTCGCATGCTCCCCACGCCATCCTGTAATGGCAACACCGCCATGGCATTAGCCACCAATTACGCGGCCTTCCAGGGGAATTGTCTCGATGGCCATTTAAGCCTgagtggacacacacatacacacacacaaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1507505 False 1069 lncRNA 0.46 4 68285896 68287268
TU1507521 False 1122 TUCP 0.46 4 68285896 68287268
TU1507523 False 920 lncRNA 0.47 4 68285896 68287268
TU1507524 False 918 lncRNA 0.47 4 68285896 68287268
TU1507528 False 1120 lncRNA 0.47 5 68285896 68287268
TU1507533 True 918 lncRNA 0.47 6 68285896 68287268

Neighbor

gene id symbol gene type direction distance location
LOC110500445 mest coding upstream 500694 67734074 ~ 67785202 (+)
LOC110490600 LOC106608917 coding upstream 552914 67672486 ~ 67732982 (+)
LOC110518028 NA coding upstream 813116 67471037 ~ 67472780 (+)
LOC110499835 st8sia1 coding upstream 874084 67385803 ~ 67411812 (+)
LOC110499842 LOC106609637 coding upstream 1134209 67136029 ~ 67151687 (+)
LOC110506716 plxna4 coding downstream 111373 68398641 ~ 68886663 (+)
nrf1 nrf1 coding downstream 736489 69023757 ~ 69059625 (+)
LOC118938835 NA coding downstream 795933 69083201 ~ 69087679 (+)
LOC110490608 LOC106609781 coding downstream 848105 69135373 ~ 69147896 (+)
LOC110490616 LOC106609775 coding downstream 911738 69199006 ~ 69220231 (+)
G1320818 NA non-coding upstream 40311 68245223 ~ 68245585 (+)
G1320812 LOC106609608 non-coding upstream 46093 68236793 ~ 68239803 (+)
G1320790 NA non-coding upstream 91662 68194006 ~ 68194234 (+)
G1320789 NA non-coding upstream 95356 68190199 ~ 68190540 (+)
G1320764 NA non-coding upstream 128725 68156304 ~ 68157171 (+)
G1320857 NA non-coding downstream 59714 68346982 ~ 68350962 (+)
G1320875 NA non-coding downstream 97762 68385030 ~ 68385239 (+)
G1320877 NA non-coding downstream 108068 68395336 ~ 68395547 (+)
G1320878 NA non-coding downstream 109972 68397240 ~ 68410015 (+)
G1320891 NA non-coding downstream 132145 68419413 ~ 68419690 (+)
G1320366 NA other upstream 741415 67544041 ~ 67544481 (+)
G1319976 LOC106609634 other upstream 1040651 67243838 ~ 67245245 (+)
LOC110499851 LOC106576554 other upstream 1220517 66981465 ~ 67065448 (+)
LOC110490596 LOC106576549 other upstream 1342446 66930414 ~ 66961526 (+)
G1319408 NA other upstream 1867074 66413361 ~ 66418822 (+)
G1321053 NA other downstream 507330 68794598 ~ 68795981 (+)
G1322119 NA other downstream 1510928 69798196 ~ 69799862 (+)
G1322161 NA other downstream 1613676 69900944 ~ 69903658 (+)
G1322725 NA other downstream 2556677 70843945 ~ 70847944 (+)
G1322763 NA other downstream 2648957 70936225 ~ 70937145 (+)

Expression


Co-expression Network