XLOC_032143 (si:ch73-185c24.2)


Basic Information

Item Value
gene id XLOC_032143
gene name si:ch73-185c24.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34028532 ~ 34036231 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062814
TCCTTAATCTTGGAAATGCTTCACAAAAATGAACCTGTTCATGATAAAATGTGAAGtctgacaagaaaaaaaacatcagttttGAGATATTCCAAATAGCCGGAAGAGCCCCTTCTCAGGAAGCAGGAAAACATGGGGTGTGTGACACACACAGTGTGTGTGCTCCTGTGTTTTTGGGTCTCAGGATCAAGCACTCTCCAGACTGTGGGTCCATGTACGGTCAACAGAGAGACGGCTGCGTTTGATTGCAGTGGGAAAAGACTTACATCGGTACCGAAGCACATCTGGATGAACGTGACCTACTTGGATTTGTCTGACAATCTGTTAGATTtaactcgcattgacagtttcAAGCGCCTGAATCGATTCAGCAACTTGGTTACACTGAACCTATCAGGCAACTACTTCCCCCTACTGTTAAAAGAGCATCTCTACAGGCTTACTTCTCTTAAAGTGCTAGACTTGAGTAGATGCAAACTGGCCGCAGTGGAGGCAGATGCTCTGAGCAGCCTTTCCAACCAGTTCGTGCAAATCAGAGGAGAACCAAACAGACACGAAGTAGGAAAACTGAAGAGCTTGCTAAACATTGATGAACATTCTGAGGATACTGACCGTGGAGCTTTTCTGCGTAAACTGCTCGCAGTGGAAACAAACGCTACAAATAATgGCACAAAAGCAGTTATTAAGGATCAAAAACCTGAAAACTCTTCAAGCAGCTGGAAGGTTCTTGTGGCTGTTCTGGTGTCAGCAATCACCCTCTCTGTTTTTATAGCTGTAATGGCCAAATGCAAAGTTGTACACAGGTATCTGGCGAGCTACAGACACTCCAGACTCAGCGAGGTAGACGCCACTAGTCAATGTGACCCTGGCAACTTTGAGGTGGGGTTTGCGACCCATGGCGGCCCCGGGACCCGTGCGGTTGCACCTGACATTGAGGAAGATGACGATGGCTTTATTGAAGATAACTATATTCAAGCCAGTGAAAGTGAGAGAGCTACTAGAGAGACCACAttgactgatgatgatgatgatgatgaagaggaggaggagattGAGTTTAGTATTGGTTAGTCATAATAAGTCTAATGTTGTATTATGTGATGATATTTGTAATAACTTTCATTGAGAAGTCACTAACAAACATTTAGTATTGCATAATCA

Function

symbol description
si:ch73-185c24.2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C1orf210 (chromosome 1 open reading frame 210).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-189 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C1orf210 (chromosome 1 open reading frame 210).

Ensembl:

ensembl_id ENSDARG00000096908

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062814 True 1161 mRNA 0.44 5 34028532 34036231

Neighbor

gene id symbol gene type direction distance location
XLOC_032142 NA coding upstream 43867 33983869 ~ 33984665 (+)
XLOC_032141 NA coding upstream 46038 33981639 ~ 33982494 (+)
XLOC_032140 orc1 coding upstream 77615 33931095 ~ 33950917 (+)
XLOC_032139 gpbp1l1 coding upstream 117574 33881372 ~ 33910958 (+)
XLOC_032137 CR855206.3 coding upstream 193351 33813288 ~ 33835181 (+)
XLOC_032144 ap1m3 coding downstream 2732 34038963 ~ 34073164 (+)
XLOC_032145 NA coding downstream 149442 34185673 ~ 34186594 (+)
XLOC_032146 CR848703.1 coding downstream 406178 34442409 ~ 34510136 (+)
XLOC_032147 lrp8 coding downstream 475655 34511886 ~ 34811508 (+)
XLOC_032148 il23r coding downstream 831925 34868156 ~ 34895175 (+)
XLOC_032138 CR855206.2 non-coding upstream 208553 33817691 ~ 33819979 (+)
XLOC_032135 NA non-coding upstream 747496 33280353 ~ 33281036 (+)
XLOC_032150 NA non-coding downstream 906374 34942605 ~ 34943518 (+)
XLOC_032151 NA non-coding downstream 941469 34977700 ~ 34980647 (+)
XLOC_032154 CR385065.1 non-coding downstream 1347960 35384191 ~ 35393308 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G489511 NA unknown CI01000340 null 6320457 ~ 6327372 (-)