XLOC_032144 (ap1m3)


Basic Information

Item Value
gene id XLOC_032144
gene name ap1m3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34038963 ~ 34073164 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062815
GCCTACAAACCCGGAAGACTCGCGTGTTAGGGATGGGGAATATCTTTCGGCATTTCAGCTGATTAAACTTTAGGAAAATTTGCTAAACTTCGACACCTGTCAGTTAGTTCTTGTCATCCAACACCTTTGACGAGGATGGCCGCGTCCGCGATCTTCATCCTGGACCTGAAAGGCAAGGTGCTCATATGTCGCAACTACATGGGCAACATTGACATGAACGTGATAGACAACTTCATGCCGATAATGATGAAGAGAGAGGAAGAAGCAGAGTTGTCACCAGTTGTTATTCACGGCTCCACACATTTCCTCTGGATCAAGCACAGCAACCTGTACTTGGTTGCGATGACAAAGAAAAACACCAATGCTGCTCTTGTATACTCCTTCCTGTACAAATTAGTGGAGGTTTTCACTGAATATTTCAAATCACTTGAAGAAGAGAGCATTAGAGACAATTTCGTGACAGTATATGAGCTAATGGATGAAGTCATGGACTTTGGATTCCCTCAAACCACTGACAGCAAGATCTTGCTAGAGTATATTACTCAGCAGGGGCACAAGCTGGAGGTTGGCGCACCAAGACCCCCTGCTACAGTGACCAATGCTGTGTCCTGGAGGTCAGAGGGCATCAAGTACAGGAAAAATGAAGTCTTCATGGATGTCATTGAGTCTGTCAATCTTTTGGTCAGTGCTACGGGCAGCGTTCTGCGGAGTGAGATTTTGGGATGCATCAAACTCAAAGTCGTTCTGTCAGGCATGCCTGAATTAAGGCTTGGACTCAATGATAAAGTGCTCTTTGAAATCACCGGACGAGAGAAGACAAAGTCTGTTGAGCTTGAAGATGTTAAGTTTCATCAGTGTGTGCGTCTGTCTCGCTTCGAAAATGACCGGACCATCTCTTTCATCCCACCTGATGGAGAATCTGAGCTCATGTCTTATCGGCTCAACACCACGGTGAAGCCTCTAATATGGATTGAGAGCGTAATAGAGAAGTTCTCTCACAGTCGAGTAGAGATCAAGGTTAAGGCCCGCAGTCAGTTCAAGAGCCGCTCCACTGCCAATAATGTGTCCATCTTAGTTCCTGTTCCCAGTGATGCTGATTCACCCAAATTCAAGACCACCACAGGACAGGCCAAATGGGTTCCTGAGAAAAGTGCTGTGGAGTGGAACATCAAGTCCTTCCCTGGTGGAAAGGAGTTCATGATGCGAGCTCATTTTGGACTGCCGAGTGTTGAAAGTGATGAACTGGAGGGCAAGAGACCTATCACAGTCAAGTTTGAGATTCCTTATTTCACAGTGTCCGGCATACAGGTGCGATACTTGAAGATTATTGAGAAGAGCGGATACCAGGCACTACCGTGGGTGCGTTATATCACTCAGAGTGGAGATTATCAACTGAGGACCAACTGAGAGAGGACAGCTTCGGTGTGTGTTGTGTCTTTTGTCGGTCCTGTTTCATCAGTCAGACAGACATCGCCTTCACACAGCAGTTGGACATCTCTACCTTCTCCTTTGCTTTCACCTCAGATCAGGTTTTACTAATTTAACAAGGAAGTTGGACAGCAAAGTTACTGAGAAACTCCTATGGAACTattgattttaaattataatcCAGAGGTTGTGTTACAGAGCTATAATCTATTGATATTTgtaccctcatgttgttccaaacctgtgtatgttttctccatttaaacacacactcaaaatctataataaaaaagtcaacggggtggcacggtggcttagtgattagcactgttgccttacagcaagaaggttgctggttcgagtcctggctggctgtgtggagtttaaatgtTGTCCTCATTTTTGTGTGAGtttgctccaggtgctccggtttcccccacaatccaaacataTTCGGTATAggggaatttaataaactaaattggccatagtgtatgagtgtttgtgtgtgtgaatgtgagagtgtatgggtgtttcccagtattgagttgaggctggaagggcattagcagcgtaaaacaaatactgtaatagttgaggttcattccgctgtggcgacccctgataaataagggactaaactcaaggaaaatatgaatgaatgaaagtcaataGAGTTGTTGTTTTGGATTCTTTTGACTTTCATTTCATggacaaaatataataaaacattaataatatctTTGTATATGCTTCAcagaaaaatttatatttaaaaagggTCAGGGTTGTTATTGTTAAACTTTTTGCTTATCaatgctatgaaagtcaatggtgttCAGGGTTGTTTTTTTGGACTCCACTGACTTTGAAAGTACAGATAAAATCAATGAAatccttaaaaatatatatttttaaatttttcacaGGAAAACATAACTAAACCAAAAACCCAAACCGGAAACACTTTATAGTAACTGCACACTATGATTcataaatataatatgataaatagTTAAATTATAATTTGTTAAGCATTCGTTCTTCATTAACAGATGTTAACCACAGATACATATGCTCTGTTCTTGACTTGTAAcccatttaaaatgtgcttaatgattgcaTTTccatactttattattttttcattactaaattaagtatcacattatttacgaACCAGTTATTTAAGTGAAGTTAGtggtttttaaagattat
>TCONS_00062816
TTTAGGAAAATTTGCTAAACTTCGACACCTGTCAGTTAGTTCTTGTCATCCAACACCTTTGACGAGGATGGCCGCGTCCGCGATCTTCATCCTGGACCTGAAAGGCAAGGTGCTCATATGTCGCAACTACATGGGCAACATTGACATGAACGTGATAGACAACTTCATGCCGATAATGATGAAGAGAGAGGAAGAAGCAGAGTTGTCACCAGTTGTTATTCACGGCTCCACACATTTCCTCTGGATCAAGCACAGCAACCTGTACTTGGTTGCGATGACAAAGAAAAACACCAATGCTGCTCTTGTATACTCCTTCCTGTACAAATTAGTGGAGGTTTTCACTGAATATTTCAAATCACTTGAAGAAGAGAGCATTAGAGACAATTTCGTGACAGTATATGAGCTAATGGATGAAGTCATGGACTTTGGATTCCCTCAAACCACTGACAGCAAGATCTTGCTAGAGTAAGTTCTGACAGATTGAGCATTCAACCGTCTCTGCTCAGAGAACACCATTCATCCCTTACTAACAGTGCTGTGAGGGGTCAGCATTCACTATTCAAGCTCAGTGCTATTCATAATCACTATATGTGCCTTGTGCAGAGGGCACAGTTTGACAATGCAATTATTAGTGTGATATTGTACATAGAGAAATGGTTGGGTAAACAGAGATGTAGAAAGTAAGCAAGTCAAGtgcttgagtaaaagtacagataccatAATTAAATTTCCTATAGTAAAAGCACTGTTTTGCTGAAGCTTAGGAGTACAgtacttattttttatgtatttagttttaagagtcagttgtactcattgaatgaatgaatgtttatttatacttaaaaaaaatactttgttttattacTAAAATGTGCCATACACTGATAACTGCTACTGACATAATGTGTGCAAATAAGTGAGACTTACAAAATAAAGCATGTAGCTGAGTATATAAAATAAGCTGAGTATATAAAACTAAATGTGTTCTGGTAAAAGCACACAAATCAGGCAAATCAGGTCAGTCCAGTTCACAAAAGAATTGGTCAGCGCAGATTTAGCAGGTTAAATGAGACAAAAATCTGGTTCAAAAATAAAACATGGGTTAAGCATCTCTGAGAGAATGACGATTTGTCCAggtataacatttataatatgaaataatcataacatttttttaatgaattgttGTGGAGTAAATAGTATGTTTTGAAAGGTAGTGaagtaaaagttttatttttattaaaatggtcATAAAAATATTCCTCCCATAGCTTGTGATTTATGgtgttttatatgtttatttacagttttgaaTTCTGGAGGGTTTTGTTTTCTGCTGTAACTGTTGATGTTTAGAAggttaaaaaagaaacatttatttacatttttagaagTTTGATACAATATATAGTTTGAGTTGGC

Function

symbol description
ap1m3 Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in cerebellum; hindbrain; midbrain; midbrain hindbrain boundary; and somite.

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0007420 brain development biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0030136 clathrin-coated vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0035615 clathrin adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-159 Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in cerebellum; hindbrain; midbrain; midbrain hindbrain boundary; and somite.

Ensembl:

ensembl_id ENSDARG00000039512

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062815 False 2646 mRNA 0.41 12 34038963 34073164
TCONS_00062816 True 1425 mRNA 0.35 4 34039031 34047258

Neighbor

gene id symbol gene type direction distance location
XLOC_032143 si:ch73-185c24.2 coding upstream 2732 34028532 ~ 34036231 (+)
XLOC_032142 NA coding upstream 54298 33983869 ~ 33984665 (+)
XLOC_032141 NA coding upstream 56469 33981639 ~ 33982494 (+)
XLOC_032140 orc1 coding upstream 88046 33931095 ~ 33950917 (+)
XLOC_032139 gpbp1l1 coding upstream 128005 33881372 ~ 33910958 (+)
XLOC_032145 NA coding downstream 112509 34185673 ~ 34186594 (+)
XLOC_032146 CR848703.1 coding downstream 369245 34442409 ~ 34510136 (+)
XLOC_032147 lrp8 coding downstream 438722 34511886 ~ 34811508 (+)
XLOC_032148 il23r coding downstream 794992 34868156 ~ 34895175 (+)
XLOC_032149 il12rb2 coding downstream 835433 34908597 ~ 34925690 (+)
XLOC_032137 CR855206.3 non-coding upstream 203782 33813288 ~ 33835181 (+)
XLOC_032138 CR855206.2 non-coding upstream 218984 33817691 ~ 33819979 (+)
XLOC_032135 NA non-coding upstream 757927 33280353 ~ 33281036 (+)
XLOC_032150 NA non-coding downstream 869441 34942605 ~ 34943518 (+)
XLOC_032151 NA non-coding downstream 904536 34977700 ~ 34980647 (+)
XLOC_032154 CR385065.1 non-coding downstream 1311027 35384191 ~ 35393308 (+)

Expression


Co-expression Network