G1321730 (LOC106576505)


Basic Information

Item Value
gene id G1321730
gene name LOC106576505
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69213441 ~ 69213663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1508671
TGGAATTGTCCTGACCACGTCTACTTGGTAGTTCTCTGACAGACTGAGGCCATAGGAGATCCCCGTTGAGACCATGACCACAATGATCTCTCCTGGGATGGGCACAGGCAGCTTCTTCTTGAAGCGCTCGTTGAGGTCCTTCACGCAGTAGAGGACCACCATGCAGACCCCGCCCACAATCAACGTGGTCACGTTGGTGCTGGTGATGTCACTGAACACGGCC

Function

NR:

description
LOW QUALITY PROTEIN: prestin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1508671 True 223 lncRNA 0.55 1 69213441 69213663

Neighbor

gene id symbol gene type direction distance location
LOC110490615 tspan33 coding downstream 11501 69184655 ~ 69201940 (-)
smo LOC106609776 coding downstream 28941 69164155 ~ 69184500 (-)
LOC110490790 LOC106609779 coding downstream 49747 69149477 ~ 69163694 (-)
LOC110490606 LOC106609763 coding downstream 85989 69118777 ~ 69127452 (-)
LOC110490613 ube2h coding downstream 98550 69084805 ~ 69114891 (-)
LOC110490619 psmc2 coding upstream 9408 69223071 ~ 69227704 (-)
LOC110490620 pmpcb coding upstream 20050 69233713 ~ 69237810 (-)
LOC110490621 kcnc2 coding upstream 119557 69333220 ~ 69417065 (-)
LOC110499783 LOC106609772 coding upstream 211177 69424840 ~ 69430808 (-)
LOC110500968 LOC106609767 coding upstream 288874 69502537 ~ 69513403 (-)
G1321720 NA non-coding downstream 42932 69170162 ~ 69170509 (-)
G1321655 NA non-coding downstream 110106 69057052 ~ 69103335 (-)
G1321739 NA non-coding upstream 37572 69251235 ~ 69251458 (-)
G1321740 NA non-coding upstream 38298 69251961 ~ 69252193 (-)
G1321747 NA non-coding upstream 53929 69267592 ~ 69267847 (-)
G1321748 NA non-coding upstream 54388 69268051 ~ 69268455 (-)
G1321778 NA non-coding upstream 91805 69305468 ~ 69305834 (-)
G1321652 nrf1 other downstream 140165 69031026 ~ 69073276 (-)
LOC110513021 exoc4 other downstream 1037059 67998532 ~ 68239937 (-)
LOC118938833 LOC106608919 other downstream 1415606 67785217 ~ 67797863 (-)
G1320139 NA other downstream 2019948 67193116 ~ 67193493 (-)
G1321729 NA other upstream 6640 69220303 ~ 69223028 (-)
G1321997 NA other upstream 348647 69562310 ~ 69563040 (-)
G1322348 NA other upstream 685022 69897748 ~ 69899703 (-)
G1323036 NA other upstream 1322789 70536452 ~ 70537139 (-)
LOC110490645 LOC106576589 other upstream 1329693 70543356 ~ 70547418 (-)

Expression


Co-expression Network