XLOC_032154 (CR385065.1)


Basic Information

Item Value
gene id XLOC_032154
gene name CR385065.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35384191 ~ 35393308 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062830
gccttttgttatttaACACACCCCTTTCCCCGAAAAGATTCTTGGATTTACTACTTAAGGGAACGTTTCTAAACGTTCGATTCTgttacccagatcagcccattTCGTGGAACTTCAtgttccatgttatgtatattttgaagtcagCTTTAATGACCTCAAACCAGCCTTAAACCTACCGATACCACCAAACATGTTCCTATACCCATATcccaccagaagtgttctgcaatacattatgcacacgATTCACTACCTATGTTTACTTACAACAAGAAGGTGAAAAATAAAGATGACTACATCTTATTGACTGACTTCAGAAGTTCTGGACTCTTATTGCAGTTTTCATTGGCAATCGGCATAATACTGACAACTCTACTCTACAAATCACATTTGATGCTTTGttgaaaatacttatt

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1905330 regulation of morphogenesis of an epithelium biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0060485 mesenchyme development biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0014028 notochord formation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103074

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062830 True 419 lncRNA 0.37 3 35384191 35393308

Neighbor

gene id symbol gene type direction distance location
XLOC_032153 rgs4 coding upstream 17247 35362225 ~ 35366944 (+)
XLOC_032152 uhmk1 coding upstream 322724 35052721 ~ 35061467 (+)
XLOC_032151 NA coding upstream 403544 34977700 ~ 34980647 (+)
XLOC_032150 NA coding upstream 440673 34942605 ~ 34943518 (+)
XLOC_032149 il12rb2 coding upstream 458501 34908597 ~ 34925690 (+)
XLOC_032155 NA coding downstream 401349 35794657 ~ 35824376 (+)
XLOC_032156 NA coding downstream 522945 35916253 ~ 36259154 (+)
XLOC_032157 NA coding downstream 723396 36116704 ~ 36119890 (+)
XLOC_032158 BX936433.1 coding downstream 887697 36281005 ~ 36285111 (+)
XLOC_032159 rhcgl1 coding downstream 988401 36381709 ~ 36391687 (+)
XLOC_032146 CR848703.1 non-coding upstream 874055 34442409 ~ 34510136 (+)
XLOC_032145 NA non-coding upstream 1197597 34185673 ~ 34186594 (+)
XLOC_032142 NA non-coding upstream 1399526 33983869 ~ 33984665 (+)
XLOC_032160 NA non-coding downstream 1021415 36414723 ~ 36415086 (+)

Expression


Co-expression Network