XLOC_032154 (CR385065.1)


Basic Information

Item Value
gene id XLOC_032154
gene name CR385065.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35384191 ~ 35393308 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062830
gccttttgttatttaACACACCCCTTTCCCCGAAAAGATTCTTGGATTTACTACTTAAGGGAACGTTTCTAAACGTTCGATTCTgttacccagatcagcccattTCGTGGAACTTCAtgttccatgttatgtatattttgaagtcagCTTTAATGACCTCAAACCAGCCTTAAACCTACCGATACCACCAAACATGTTCCTATACCCATATcccaccagaagtgttctgcaatacattatgcacacgATTCACTACCTATGTTTACTTACAACAAGAAGGTGAAAAATAAAGATGACTACATCTTATTGACTGACTTCAGAAGTTCTGGACTCTTATTGCAGTTTTCATTGGCAATCGGCATAATACTGACAACTCTACTCTACAAATCACATTTGATGCTTTGttgaaaatacttatt

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1905330 regulation of morphogenesis of an epithelium biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0060485 mesenchyme development biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0014028 notochord formation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103074

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062830 True 419 lncRNA 0.37 3 35384191 35393308
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_032153 rgs4 coding upstream 17247 35362225 ~ 35366944 (+)
XLOC_032152 uhmk1 coding upstream 322724 35052721 ~ 35061467 (+)
XLOC_032151 NA coding upstream 403544 34977700 ~ 34980647 (+)
XLOC_032150 NA coding upstream 440673 34942605 ~ 34943518 (+)
XLOC_032149 il12rb2 coding upstream 458501 34908597 ~ 34925690 (+)
XLOC_032155 NA coding downstream 401349 35794657 ~ 35824376 (+)
XLOC_032156 NA coding downstream 522945 35916253 ~ 36259154 (+)
XLOC_032157 NA coding downstream 723396 36116704 ~ 36119890 (+)
XLOC_032158 BX936433.1 coding downstream 887697 36281005 ~ 36285111 (+)
XLOC_032159 rhcgl1 coding downstream 988401 36381709 ~ 36391687 (+)
XLOC_032146 CR848703.1 non-coding upstream 874055 34442409 ~ 34510136 (+)
XLOC_032145 NA non-coding upstream 1197597 34185673 ~ 34186594 (+)
XLOC_032142 NA non-coding upstream 1399526 33983869 ~ 33984665 (+)
XLOC_032160 NA non-coding downstream 1021415 36414723 ~ 36415086 (+)

Expression

Expression of XLOC_032154(CR385065.1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.

Expression of XLOC_032154(CR385065.1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.

Co-expression Network