XLOC_032155


Basic Information

Item Value
gene id XLOC_032155
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35794657 ~ 35824376 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064873
TTGCATTTCTTCTGGCAGATCGCCAGTCTTTCAGAGTCCGAATCAGCTTGTTCTAAACACCCGTTTagaaaatgaatcatttgagtcggATCTTTTTTTATACACGATTCAAACATCATATTGGCGCCTACTCTGAATCATTAATCAGTTCGAATCATTTAGTCTACGAGCAAGCAGCGTGTTGTGCTTTTCTGAAAAACAAGAACTCGACACCTTTGATTACATGAGGATGATGGCAGCACTAAATTAATGATATATTTACCTTCAATCAATAGAAAGAGCCAAATGCATCGTATGACTGCAGTGAGGAAAGCGTGTCAAGTTCAACTGAGCCACGTGGAGTGTACGATTGACACAGGAATTCTTCATGATTTACCACAGCTTATTGGAGTGAAGAAAAGAAAACTGCATGGATATGCATCTCCGATCCTTTTGCACCATTTTGAGTTCAGTTTGAGTCACCATTGTGAGTCCTCTTGAGTCAAGTTCAATAGCAGGGAGCAAGTGTTAAATGTACTG
>TCONS_00062831
AATCAGTTCGAATCATTTAGTCTACGAGCAAGCAGCGTGTTGTGCTTTTCTGAAAAACAAGAACTCGACACCTTTGATTACATGAGGATGATGGCAGCACTAAATTAATGATATATTTACCTTCAATCAATAGAAAGAGCCAAATGCATCGTATGACTGCAGTGAGGAAAGCGTGTCAAGTTCAACTGAGCCACGTGGAGTGTACGATTGACACAGGAATTCTTCATGATTTACCACAGCTTATTGGAGTGAAGAAAAGAAAACTGCATGGATATGG

Function

GO:

id name namespace
GO:0006399 tRNA metabolic process biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0098536 deuterosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008173 RNA methyltransferase activity molecular_function
GO:0140101 catalytic activity, acting on a tRNA molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096356

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064873 False 519 lncRNA 0.40 3 35794657 35824376
TCONS_00062831 True 277 processed_transcript 0.40 2 35794799 35795619

Neighbor

gene id symbol gene type direction distance location
XLOC_032154 CR385065.1 coding upstream 401349 35384191 ~ 35393308 (+)
XLOC_032153 rgs4 coding upstream 427713 35362225 ~ 35366944 (+)
XLOC_032152 uhmk1 coding upstream 733190 35052721 ~ 35061467 (+)
XLOC_032151 NA coding upstream 814010 34977700 ~ 34980647 (+)
XLOC_032150 NA coding upstream 851139 34942605 ~ 34943518 (+)
XLOC_032156 NA coding downstream 91877 35916253 ~ 36259154 (+)
XLOC_032157 NA coding downstream 292328 36116704 ~ 36119890 (+)
XLOC_032158 BX936433.1 coding downstream 456629 36281005 ~ 36285111 (+)
XLOC_032159 rhcgl1 coding downstream 557333 36381709 ~ 36391687 (+)
XLOC_032160 NA coding downstream 590347 36414723 ~ 36415086 (+)
XLOC_032146 CR848703.1 non-coding upstream 1284521 34442409 ~ 34510136 (+)
XLOC_032145 NA non-coding upstream 1608063 34185673 ~ 34186594 (+)
XLOC_032162 BX950188.1 non-coding downstream 640971 36465347 ~ 36618498 (+)

Expression


Co-expression Network