XLOC_032157


Basic Information

Item Value
gene id XLOC_032157
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36116704 ~ 36119890 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062833
CCGCGTTTTTGAGTGAGTGTGGACGACGCTGGATCTTCTCACCGGCTGCCATGATCGAACAAACAGCAGAAATTAAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTTGTGGAAGCTTGATGAGTACACACCAGGTTTTGCAGCTAATGCATGCCAAAGGAGGAGCAGCTAGTTGCAAGATGCATCCTCTGCTGGACAGTTTaaatACACAGAACATTGAGGAAAAAAAGAGATGCTGTTGTCTGCTGCCTCAATAACTACCTCGGGGAAAGACAAGAAGATATGTTCCATGACTGGCAGgAATGTGAGGAGTACACAGACAAAACGATGAAGGAGATTGTGAAGCACAATTTGTCTATTGTGATCGGGGGAAAACAAGTGATGGAAGGATGAGGAAGCCAAACAGAGGCATGCATACTGCTGGGACTCATATGCAATTAACATTGAATATCCAAAGGAGCTGAAGAACACGTTTGAAGCTTTTCAAAAACTTTGTTTTAGAAAATGATGGGGCAAAACCACTGAAGAAGGTCCACAGCCTCAAAAATAAGCTCATGCAGTAGACATTTCTCCTCTTACTTAAAGAGGATCTTTTGTTTGGACATGCCTTGATGGAGTTGTAATggagtgttttatatatttttttctcttccatCATTTGCttcacacacagacaaagacCCATCCACTGTCTCAGCCCTCTCCATTGCTCTGTGTTTtcccccatattgacagaaaaggAATACTAATAGAAAGTGGCCTAAAGAATTTTGATCTCACCTACCGTCTTTTCTTCCccagttgtttgtttattttattctcatCCTATCTGCGAGAGTGAGAGTAAggacaaaaaataaagaattttgttttacttttttccgGATATTTGATACTGTACATGCACAAAAACAACcacaagtctgtgtgtgtgcttttggcTTTTAAAATAG
>TCONS_00062834
TGAGTGAGTGTGGACGACGCTGGATCTTCTCACCGGCTGCCATGATCGAACAAACAGCAGAAATTAAGGCAGAGTCTGTATATGTGGACACTTACTATTTGCCCTCTCTACAGTTTCTCTTGTCTGTCCCCCACAAGCAGAGACCCACTGATAGACCGCTGTTACCAGTTCTAGGGCTGACACATCCGCACACGTCCACATCACAAGTGTATCCTGAAAAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTTGTGGAAGCTTGATGAGTACACACCAGGTTTTGCAGCTAATGCATGCCAAAGGAGGAGCAGCTAGTTGCAAGATGCATCCTCTGCTGGACAGTTTaaatACACAGAACATTGAGGAAAAAAAGAGATGCTGTTGTCTGCTGCCTCAATAACTACCTCGGGGAAAGACAAGAAGATATGTTCCATGACTGGCAGgAATGTGAGGAGTACACAGACAAAACGATGAAGGAGATTGTGAAGCACAATTTGTCTATTGTGATCGGGGGAAAACAAGTGATGGAAGGATGAGGAAGCCAAACAGAGGCATGCATACTGCTGGGACTCATATGCAATTAACATTGAATATCCAAAGGAGCTGAAGAACACGTTTGAAGCTTTTCAAAAACTTTGTTTTAGAAAATGATGGGGCAAAACCACTGAAGAAGGTCCACAGCCTCAAAAATAAGCTCATGCAGTAGACATTTCTCCTCTTACTTAAAGAGGATCTTTTGTTTGGACATGCCTTGATGGAGTTGTAATggagtgttttatatatttttttctcttccatCATTTGCttcacacacagacaaagacCCATCCACTGTCTCAGCCCTCTCCATTGCTCTGTGTTTtcccccatattgacagaaaaggAATACTAATAGAAAGTGGCCTAAAGAATTTTGATCTCACCTACCGTCTTTTCTTCCccagttgtttgtttattttattctcatCCTATCTGCGAGAGTGAGAGTAAggacaaaaaataaagaattttgttttacttttttccgGATATTTGATACTGTACATGCACAAAAACAACcacaagtctgtgtgtgtgcttttggcTTTTAAAATAG
>TCONS_00064882
aataatattttttcttccaactAAGATACTTTCATGTGATATATATGAGATCTGGTTTgtgatttaaaataacatttttggtcCTTTTACTTCCTAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTTGTGGAAGCTTGATGAGTACACACCAGGTTTTGCAGCTAATGCATGCCAAAGGAGGAGCAGCTAGTTGCAAGATGCATCCTCTGCTGGACAGTTTaaatgtatgttattttatttttttacaaatatataattattgaTGTGAGggaattaaaagtgaaataatttgtaaaaaattgCTTTAAGTTGAGCTCCATACCAACTTAAACTACCTTTTAACATCAATTTGTAAATTGATTTTCTTTACTGCTTTATCCATTTGGGTCATGAGTAGCTTGAGACAACCAAGCATTTATCAGGCAAAGGGGCAGGGTTCACTCTGTACAGGTCGCCAGTCTATTCCTGGGCCAGAATTTGGTCTTAATATATGTAAATCACTCCCACACTAAATTGTGTCTCCCTACAGACACAGAACATTGAGGAAAAAAAGAGATGCTGTTGTCTGCTGCCTCAATAACTACCTCGGGGAAAGACAAGAAGATATGTTCCATGACTGGCAGGTATGTCATATTGATAACAGATTCTTGATCAACTCAAGTGATCCTCCTCTTATATCCCCCTTCTCCTTTTGTCTTCTACTCTCCTCTGCTCTCCTTTAGATAAACTGAAATATATTGAAACagaatcttaaaataaaattgtgtttgctttttgtttgtttgtttttaatgtaggAATGTGAGGAGTACACAGACAAAACGATGAAGGAGATTGTGAAGCACAATTTGTCTATTGTGATCGGGGGAAAACAAGTGATGGAAGGATGAGGAAGCCAAACAGAGGCATGCATACTGCTGGGACTCATATGCAATTAACATTGAATATCCAAAGGAGCTGAAGAACACGTTTGAAGCTTTTCAAAAACTTTGTTTTAGAAAATGATGGGGCAAAACCACTGAAGAAGGTCCACAGCCTCAAAAATAAGCTCATGCAGTAGACATTTCTCCTCTTACTTAAAGAGGATCTTTTGTTTGGACATGCCTTGATGGAGTTGTAATggagtgttttatatatttttttctcttccatCATTTGCttcacacacagacaaagacCCATCCACTGTCTCAGCCCTCTCCATTGCTCTGTGTTTtcccccatattgacagaaaaggAATACTAATAGAAAGTGGCCTAAAGAATTTTGATCTCACCTACCGTCTTTTCTTCCccagttgtttgtttattttattctcatCCTATCTGCGAGAGTGAGAGTAAggacaaaaaataaagaattttgttttacttttttccgGATATTTGATACTGTACATGCACAAAAACAACcacaagtctgtgtgtgtgcttttggcTTTTAAAATAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0072175 epithelial tube formation biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0035148 tube formation biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062833 False 967 lncRNA 0.41 4 36116704 36119890
TCONS_00062834 False 1111 lncRNA 0.42 5 36116713 36119890
TCONS_00064882 True 1466 lncRNA 0.37 1 36118425 36119890

Neighbor

gene id symbol gene type direction distance location
XLOC_032155 NA coding upstream 292328 35794657 ~ 35824376 (+)
XLOC_032154 CR385065.1 coding upstream 723396 35384191 ~ 35393308 (+)
XLOC_032153 rgs4 coding upstream 749760 35362225 ~ 35366944 (+)
XLOC_032152 uhmk1 coding upstream 1055237 35052721 ~ 35061467 (+)
XLOC_032151 NA coding upstream 1136057 34977700 ~ 34980647 (+)
XLOC_032158 BX936433.1 coding downstream 161115 36281005 ~ 36285111 (+)
XLOC_032159 rhcgl1 coding downstream 261819 36381709 ~ 36391687 (+)
XLOC_032160 NA coding downstream 294833 36414723 ~ 36415086 (+)
XLOC_032161 lrrc15 coding downstream 340007 36459897 ~ 36463695 (+)
XLOC_032162 BX950188.1 coding downstream 345457 36465347 ~ 36618498 (+)
XLOC_032150 NA non-coding upstream 1173186 34942605 ~ 34943518 (+)
XLOC_032146 CR848703.1 non-coding upstream 1606568 34442409 ~ 34510136 (+)
XLOC_032163 BX950188.2 non-coding downstream 391922 36511812 ~ 36511930 (+)
XLOC_032164 NA non-coding downstream 594469 36714359 ~ 36714622 (+)

Expression


Co-expression Network