G1322337 (LOC106598243)


Basic Information

Item Value
gene id G1322337
gene name LOC106598243
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69945641 ~ 69990817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1509425
cttgacttttactcaagtatgacaatgaagtactttttccaccactggtttaatgttgtgttgtgtagtgtcttTGCTGGAATGTATCTCAAACAATTtgttgagtttgccccaccaagatgtacatgctaaaatcgtcaCTGGCAGAGCAAACTAAAATCCCCCTGTTCAATATGAAAACCAAGAAACACGGAAATTACAATAGCTTCAAACTGAATGCTTTATTATGATTATATAATGAGATAATAAGCATTAAAAAGGATTCCATCCATCTCTATGAATAACCTCTGAAGCAAGATCATTAAGATCAGTGATTACTATTGACAGAGATAAAGTACTGAAAAGTATAGTTAGAGTAGTAGGTTTTAGAATGAAGGATTCTTAtgaactgatgttgggcaatcTCAAGCGGAAGGCTGTTCCAGAAAGAGAGATCGATGAGTTAGCAAGTGAACTTTAGACAGATCCCGAACGGCCATCAGATGCAGAGGAGAGGCTAAGGTGTGCACACCATGGTGACTCCAGACTTGGAGACCACCCAAAGACGGCCCAGGTCGTAGGTCACGTGGCCCATGAGCATGCACATTGGGACATTGCTCCATCCGGTGCCCTCTGGTTTACTGGCTGTGATGCCGTCTCTGGTATAAACGTGGCCTGCAGAGTTGACCCCAAAGACACCACCATCAGTTGCCACTTCAATCATGGAAAGCTTGCCGCCAATGTGACTCCACCCGTTGTTTTGGCAGTCTTGATTCAGACTCATTAAGTAGATATCATCATTCTTGTTGACTGCCCAGCACCCAAAAGGTCCGCAACTAGAATACTTCACACTTCCTGGCAATCCTGTCCATGGAAGGGGTGAGCCTGGACCCTTGTAGCCAACTGTGGCACTACGTGTCAGACAGTATGGTGTATCGTCCACGTTGGCCCCCACAATAAACTGTTCACCTCCAGCATCCAACTGTTTCAGAAGGCCTGCAGCTTGCACCCAGTTACCGGCCACATACTTGTAGATTGAGTCTGCCTTGTTGATACCCCAGATCCCTGCTGGTCCTACAGTGATATGCTTCAGGGAACCAGGCAGGCGGATCCATTCATCACCTACCAGGTAGTAGGGGATTTGACTTGTGTCTGTTGCAACCACTTGTCCCAGTCCTGCATCGATCTGCATCAGATTCTTGATGTTTACTACCTCCTGACAGTCCCATGCTATGGAGACAAAGACATGAGTAGAGCACACAGCCAACAAGGAGGATGAAATTATGGAGCAAACTTGATGATCAATTCCAAGTTGATCAAGCATGTTTCAGATGATGGTAACTTACCATGACTGATGGTCAGGAGACATAGGACCAATAGGACGGCTGCAGTCGCTCTCATGATGTCTCTGTAGATCTACGGTATACGTTTGGTTGTAAACCAGACTTCAATTGTCCCCTTGCAAGACTTTGCACTTTTATAGTGTTGTGGAAAATATTGAATCAAATAATTCACCAATACCAAAACTTGTGAATTTATTACAAAGTAACAGAGCCGAGCAATTCCAT
>TU1509427
cttgacttttactcaagtatgacaatgaagtactttttccaccactggtttaatgttgtgttgtgtagtgtcttTGCTGGAATGTATCTCAAACAATTtgttgagtttgccccaccaagatgtacatgctaaaatcgtcaCTGGCAGAGCAAACTAAAATCCCCCTGTTCAATATGAAAACCAAGAAACACGGAAATTACAATAGCTTCAAACTGAATGCTTTATTATGATTATATAATGAGATAATAAGCATTAAAAAGGATTCCATCCATCTCTATGAATAACCTCTGAAGCAAGATCATTAAGATCAGTGATTACTATTGACAGAGATAAAGTACTGAAAAGTATAGTTAGAGTAGTAGGTTTTAGAATGAAGGATTCTTAtgaactgatgttgggcaatcTCAAGCGGAAGGCTGTTCCAGAAAGAGAGATCGATGAGTTAGCAAGTGAACTTTAGACAGATCCCGAACGGCCATCAGATGCAGAGGAGAGGCTAAGGTGTGCACACCATGGTGACTCCAGACTTGGAGACCACCCAAAGACGGCCCAGGTCGTAGGTCACGTGGCCCATGAGCATGCACATTGGGACATTGCTCCATCCGGTGCCCTCTGGTTTACTGGCTGTGATGCCGTCTCTGGTATAAACGTGGCCTGCAGAGTTGACCCCAAAGACACCACCATCAGTTGCCACTTCAATCATGGAAAGCTTGCCGCCAATGTGACTCCACCCGTTGTTTTGGCAGTCTTGATTCAGCTGAAAACAAACAGAGTGTGTTTTAGGACAATTACAACAGTTATAATATGAAACAGTTTTAGAATAACtgacactctccatcctctactaCTCTGCTCCAGCTCTCACACTCTTTCCCAGCTCTTACACTCATTAAGTAGATATCATCATTCTTGTTGACTGCCCAGCACCCAAAAGGTCCGCAACTAGAATACTTCACACTTCCTGGCAATCCTGTCCATGGAAGGGGTGAGCCTGGACCCTTGTAGCCAACTGTGGCACTACGTGTCAGACAGTATGGTGTATCGTCCACGTTGGCCCCCACAATAAACTGTTCACCTCCAGCATCCAACTGTTTCAGAAGGCCTGAAGaccacaaagagagacagacagacggacaagcAAACAAGGAGCACATATCTGTGAGTACTTCCAAATGACATACAAGTTTACAATTTAAAATGTTTTCAACAGCCTGATGGTATCAGGAAAGCTAAGAAGCAGGTGTCCTCTGGATAAATATTGAGTAATTCTCTCCACTAACCTGCAGCTTGCACCCAGTTACCGGCCACATACTTGTAGATTGAGTCTGCCTTGTTGATACCCCAGATCCCTGCTGGTCCTACAGTGATATGCTTCAGGGAACCAGGCAGGCGGATCCATTCATCACCTACCAGGTAGTAGGGGATTTGACTTGTGTCTGTTGCAACCACTTGTCCCAGTCCTGCATCGATCTGCATCAGATTCTTGATGTTTACTACCTCCTGACAGTCCCATGCATGACTGATGGTCAGGAGACATAGGACCAATAGGACGGCTGCAGTCGCTCTCATGATGTCTCTGTAGATCTACGGTATACGTTTGGTTGTAAACCAGACTTCAATTGTCCCCTTGCAAGACTTTGCACTTTTATAGTGTTGTGGAAAATATTGAATCAAATAATTCACCAATACCAAAACTTGTGAATTTATTACAAAGTAACAGAGCCGAGCAATTCCAT
>TU1509429
ACAAACAATGTATAGCTTTAAAAAacatgttatgttttttttaaacaaataattGATCTGTCTTTGCATCCGTAGCTCCatgtatgaatttgagagtggttatattTCTCTAACTACattcctcagctgtttaccaaaacaagtagTGGGGTGTCTGGGAAGTTGTTGTTTTTATCCCAAACTGTAGCTTTACAGGACATCCCACTCTTACATACTTCATCGTACAATGTCTACACATGTCTTTATAAGTCCTATAAGTTTAGATCGGATCATATTTcactgattttatttatgtatctaCAGTATTTTAGTTGTTTCACAAAGCATGTACAGTAAGgataataattataattaaaGGTATACCATTATTATACACATAGTTCAGTAGTAACCTTACCTGGTATAAACGTGGCCTGCAGAGTTGACCCCAAAGACACCACCATCAGTTGCCACTTCAATCATGGAAAGCTTGCCGCCAATGTGACTCCACCCGTTGTTTTGGCAGTCTTGATTCAGCTGAAAACAAACAGAGTGTGTTTTAGGACAATTACAACAGTTATAATATGAAACAGTTTTAGAATAACtgacactctccatcctctactaCTCTGCTCCAGCTCTCACACTCTTTCCCAGCTCTTACACTCATTAAGTAGATATCATCATTCTTGTTGACTGCCCAGCACCCAAAAGGTCCGCAACTAGAATACTTCACACTTCCTGGCAATCCTGTCCATGGAAGGGGTGAGCCTGGACCCTTGTAGCCAACTGTGGCACTACGTGTCAGACAGTATGGTGTATCGTCCACGTTGGCCCCCACAATAAACTGTTCACCTCCAGCATCCAACTGTTTCAGAAGGCCTGAAGaccacaaagagagacagacagacggacaagcAAACAAGGAGCACATATCTGTGAGTACTTCCAAATGACATACAAGTTTACAATTTAAAATGTTTTCAACAGCCTGATGGTATCAGGAAAGCTAAGAAGCAGGTGTCCTCTGGATAAATATTGAGTAATTCTCTCCACTAACCTGCAGCTTGCACCCAGTTACCGGCCACATACTTGTAGATTGAGTCTGCCTTGTTGATACCCCAGATCCCTGCTGGTCCTACAGTGATATGCTTCAGGGAACCAGGCAGGCGGATCCATTCATCACCTACCAGGTAGTAGGGGATTTGACTTGTGTCTGTTGCAACCACTTGTCCCAGTCCTGCATCGATCTGCATCAGATTCTTGATGTTTACTACCTCCTGACAGTCCCATGCATGACTGATGGTCAGGAGACATAGGACCAATAGGACGGCTGCAGTCGCTCTCATGATGTCTCTGTAGATCTACGGTATACGTTTGGTTGTAAACCAGACTTCAATTGTCCCCTTGCAAGACTTTGCACTTTTATAGTGTTGTGGAAAATATTGAATCAAATAATTCACCAATACCAAAACTTGTGAATTTATTACAAAGTAACAGAGCCGAGCAATTCCAT
>TU1509426
TCAGAGAGTAATGTCATGGGTAGTTACACATCTTTAATAGAGCACACTGTAAAAGGTGTTGTCAAATATGTACCTGACACTACATCCATAAGGCACCTGTCAATCAAGCTATGCATCAGGGAACTAAAGGTTCACCAGTTCCTGcacactgtagtactgtagtcttATTAAACGTTCTAAGTAAGAAGATTCACAAAACAGATCTTTGCAGAGCAACCTTAAATCCCCCATGTTCAATATGATTaaaaaacacaaattatTTTCAAAATTGATGCTTTATTTGCGGGAAAATATTATATAATGAGATAATGACAAGGATTCCATTCAATCCTATTGATGACCTCTGAAGCACAGCAAAACCCATGTGGATTGTGACCGTGGCCAAGTTTACACTACGCTCAAATAGCAGCCATGGCAAAATTCAATTGAAGTGTTAATCAATAATACACTTTTATAACGCTGTTGCTTGTCAAATTGTGTAAGAAAACATCATTGATAAATTCTTTATAATATCATTAAGATCAGTGTTTACTATTGATAGAGATAAAGTACTGAAAATATAGTTAGAGCAATAGGTTTTAGAATGAAGGATTCTTAtgaactgatgttgggcaatcTCAAGCGGAAGGCTGTTCCAGAAAGAGAGATCGATGAGTTAGCAAGTGAACTTTAGACAGATCCCGAACGGCCATCAGATGCAGAGGAGAGGCTAAGGTGTGCACACCATGGTGACTCCAGACTTGGAGACCACCCAAAGACGGCCCAGGTCGTAGGTCACGTGGCCCATGAGCATGCACATTGGGACATTGCTCCATCCGGTGCCCTCTGGTTTACTGGCTGTGATGCCGTCTCTGTGTTGAAGAAAGGGGTTCATGTTTTAAAGCTTAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1509425 False 1547 lncRNA 0.44 4 69945641 69948082
TU1509427 False 1736 lncRNA 0.44 3 69945641 69948082
TU1509429 False 1495 lncRNA 0.41 2 69945641 69947251
TU1509426 True 888 lncRNA 0.40 3 69947408 69990817

Neighbor

gene id symbol gene type direction distance location
LOC110499754 LOC106609744 coding downstream 18010 69905421 ~ 69927631 (-)
LOC110499751 csrp2 coding downstream 54554 69881224 ~ 69891087 (-)
LOC110500965 osbpl8 coding downstream 115874 69678178 ~ 69829767 (-)
LOC110499760 LOC106609764 coding downstream 304811 69618968 ~ 69640830 (-)
LOC110490659 NA coding upstream 402444 70393261 ~ 70394050 (-)
LOC110490652 ctrb coding upstream 404914 70395731 ~ 70397315 (-)
LOC110490645 LOC106576589 coding upstream 552559 70543356 ~ 70547418 (-)
si:dkey-14k9.3 LOC106609712 coding upstream 559771 70550588 ~ 70558751 (-)
LOC110515225 LOC106609712 coding upstream 568179 70558996 ~ 70566048 (-)
G1322348 NA non-coding downstream 45938 69897748 ~ 69899703 (-)
G1322338 NA non-coding downstream 64552 69880641 ~ 69881089 (-)
G1322340 NA non-coding downstream 65083 69879515 ~ 69880558 (-)
G1322334 NA non-coding downstream 69749 69872028 ~ 69875892 (-)
G1322292 NA non-coding downstream 140546 69804491 ~ 69805095 (-)
G1322380 NA non-coding upstream 11691 70002508 ~ 70002730 (-)
G1322381 NA non-coding upstream 12897 70003714 ~ 70003946 (-)
G1322403 NA non-coding upstream 36407 70027224 ~ 70027596 (-)
G1322846 NA non-coding upstream 56207 70047024 ~ 70047238 (-)
G1322854 NA non-coding upstream 77537 70068354 ~ 70068609 (-)
G1321997 NA other downstream 382601 69562310 ~ 69563040 (-)
G1321729 NA other downstream 722613 69220303 ~ 69223028 (-)
LOC110490790 LOC106609779 other downstream 788642 69149477 ~ 69163694 (-)
G1321652 nrf1 other downstream 872365 69031026 ~ 69073276 (-)
G1323036 NA other upstream 545635 70536452 ~ 70537139 (-)
G1323207 NA other upstream 1034434 71025251 ~ 71039522 (-)
G1323296 LOC106609674 other upstream 1211683 71202500 ~ 71237846 (-)
LOC118938840 LOC106576579 other upstream 1866466 71841725 ~ 71923263 (-)

Expression


Co-expression Network